Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01146

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01144 and H281DRAFT_01145 are separated by 23 nucleotidesH281DRAFT_01145 and H281DRAFT_01146 overlap by 11 nucleotidesH281DRAFT_01146 and H281DRAFT_01147 are separated by 12 nucleotidesH281DRAFT_01147 and H281DRAFT_01148 are separated by 307 nucleotides H281DRAFT_01144: H281DRAFT_01144 - transcriptional regulator, LysR family, at 1,293,110 to 1,294,033 _01144 H281DRAFT_01145: H281DRAFT_01145 - hopanoid biosynthesis associated protein HpnK, at 1,294,057 to 1,294,953 _01145 H281DRAFT_01146: H281DRAFT_01146 - ceramide glucosyltransferase, at 1,294,943 to 1,296,316 _01146 H281DRAFT_01147: H281DRAFT_01147 - hypothetical protein, at 1,296,329 to 1,296,781 _01147 H281DRAFT_01148: H281DRAFT_01148 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,297,089 to 1,297,748 _01148 Position (kb) 1294 1295 1296 1297Strain fitness (log2 ratio) -1 0 1at 1294.215 kb on - strand, within H281DRAFT_01145at 1294.217 kb on - strand, within H281DRAFT_01145at 1295.092 kb on + strand, within H281DRAFT_01146at 1295.387 kb on + strand, within H281DRAFT_01146at 1295.388 kb on - strand, within H281DRAFT_01146at 1295.700 kb on - strand, within H281DRAFT_01146at 1295.716 kb on - strand, within H281DRAFT_01146at 1296.910 kb on + strandat 1296.911 kb on - strandat 1297.221 kb on + strand, within H281DRAFT_01148at 1297.222 kb on - strand, within H281DRAFT_01148

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,294,215 - H281DRAFT_01145 0.18 +0.7
1,294,217 - H281DRAFT_01145 0.18 +0.5
1,295,092 + H281DRAFT_01146 0.11 -0.2
1,295,387 + H281DRAFT_01146 0.32 -0.2
1,295,388 - H281DRAFT_01146 0.32 +0.6
1,295,700 - H281DRAFT_01146 0.55 +0.2
1,295,716 - H281DRAFT_01146 0.56 +0.6
1,296,910 + +0.6
1,296,911 - -0.0
1,297,221 + H281DRAFT_01148 0.20 -0.1
1,297,222 - H281DRAFT_01148 0.20 -0.0

Or see this region's nucleotide sequence