Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00966

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00965 and H281DRAFT_00966 are separated by 27 nucleotidesH281DRAFT_00966 and H281DRAFT_00967 are separated by 766 nucleotides H281DRAFT_00965: H281DRAFT_00965 - hypothetical protein, at 1,079,429 to 1,080,313 _00965 H281DRAFT_00966: H281DRAFT_00966 - uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107), at 1,080,341 to 1,081,120 _00966 H281DRAFT_00967: H281DRAFT_00967 - assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4), at 1,081,887 to 1,084,427 _00967 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1080.240 kb on + strandat 1080.311 kb on + strandat 1080.314 kb on + strandat 1080.407 kb on - strandat 1080.612 kb on + strand, within H281DRAFT_00966at 1080.613 kb on - strand, within H281DRAFT_00966at 1081.133 kb on - strandat 1081.133 kb on - strandat 1081.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,080,240 + -0.3
1,080,311 + +0.5
1,080,314 + +0.1
1,080,407 - +0.3
1,080,612 + H281DRAFT_00966 0.35 -0.0
1,080,613 - H281DRAFT_00966 0.35 +1.2
1,081,133 - +0.1
1,081,133 - -0.1
1,081,298 - +0.8

Or see this region's nucleotide sequence