Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00375

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00374 and H281DRAFT_00375 are separated by 87 nucleotidesH281DRAFT_00375 and H281DRAFT_00376 are separated by 34 nucleotides H281DRAFT_00374: H281DRAFT_00374 - benzoyl-CoA oxygenase, component B, at 411,272 to 412,699 _00374 H281DRAFT_00375: H281DRAFT_00375 - benzoyl-CoA oxygenase, component A, at 412,787 to 414,028 _00375 H281DRAFT_00376: H281DRAFT_00376 - transcriptional regulator, TetR family, at 414,063 to 414,803 _00376 Position (kb) 412 413 414 415Strain fitness (log2 ratio) -1 0 1 2at 411.899 kb on + strandat 412.211 kb on - strand, within H281DRAFT_00374at 412.281 kb on - strand, within H281DRAFT_00374at 412.428 kb on + strand, within H281DRAFT_00374at 412.429 kb on - strand, within H281DRAFT_00374at 413.896 kb on - strand, within H281DRAFT_00375at 413.896 kb on - strand, within H281DRAFT_00375at 414.236 kb on + strand, within H281DRAFT_00376at 414.238 kb on + strand, within H281DRAFT_00376at 414.440 kb on - strand, within H281DRAFT_00376at 414.557 kb on - strand, within H281DRAFT_00376at 414.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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411,899 + +1.9
412,211 - H281DRAFT_00374 0.66 -0.2
412,281 - H281DRAFT_00374 0.71 -0.2
412,428 + H281DRAFT_00374 0.81 +0.2
412,429 - H281DRAFT_00374 0.81 -0.2
413,896 - H281DRAFT_00375 0.89 -1.4
413,896 - H281DRAFT_00375 0.89 -1.3
414,236 + H281DRAFT_00376 0.23 +0.5
414,238 + H281DRAFT_00376 0.24 +0.0
414,440 - H281DRAFT_00376 0.51 -0.8
414,557 - H281DRAFT_00376 0.67 -0.7
414,835 - -0.9

Or see this region's nucleotide sequence