Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00332

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00331 and H281DRAFT_00332 are separated by 160 nucleotidesH281DRAFT_00332 and H281DRAFT_00333 are separated by 138 nucleotides H281DRAFT_00331: H281DRAFT_00331 - EAL and modified HD-GYP domain-containing signal transduction protein, at 362,492 to 363,766 _00331 H281DRAFT_00332: H281DRAFT_00332 - methyl-accepting chemotaxis protein, at 363,927 to 365,624 _00332 H281DRAFT_00333: H281DRAFT_00333 - L-ascorbate metabolism protein UlaG, beta-lactamase superfamily, at 365,763 to 366,542 _00333 Position (kb) 363 364 365 366Strain fitness (log2 ratio) -2 -1 0 1at 363.195 kb on + strand, within H281DRAFT_00331at 363.934 kb on - strandat 363.946 kb on + strandat 364.234 kb on - strand, within H281DRAFT_00332at 364.368 kb on - strand, within H281DRAFT_00332at 364.470 kb on - strand, within H281DRAFT_00332at 364.682 kb on - strand, within H281DRAFT_00332at 365.280 kb on - strand, within H281DRAFT_00332at 365.732 kb on + strandat 365.733 kb on - strandat 366.071 kb on - strand, within H281DRAFT_00333at 366.352 kb on - strand, within H281DRAFT_00333at 366.361 kb on - strand, within H281DRAFT_00333at 366.440 kb on - strand, within H281DRAFT_00333at 366.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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363,195 + H281DRAFT_00331 0.55 +0.4
363,934 - +0.2
363,946 + -1.8
364,234 - H281DRAFT_00332 0.18 -1.6
364,368 - H281DRAFT_00332 0.26 -1.3
364,470 - H281DRAFT_00332 0.32 +0.4
364,682 - H281DRAFT_00332 0.44 -1.8
365,280 - H281DRAFT_00332 0.80 +0.6
365,732 + -0.4
365,733 - +0.7
366,071 - H281DRAFT_00333 0.39 +1.4
366,352 - H281DRAFT_00333 0.76 +0.2
366,361 - H281DRAFT_00333 0.77 +0.4
366,440 - H281DRAFT_00333 0.87 +0.1
366,611 + -0.2

Or see this region's nucleotide sequence