Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00127

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00125 and H281DRAFT_00126 are separated by 78 nucleotidesH281DRAFT_00126 and H281DRAFT_00127 are separated by 155 nucleotidesH281DRAFT_00127 and H281DRAFT_00128 are separated by 131 nucleotides H281DRAFT_00125: H281DRAFT_00125 - Protein of unknown function (DUF2486), at 132,747 to 133,460 _00125 H281DRAFT_00126: H281DRAFT_00126 - cytochrome c, at 133,539 to 133,880 _00126 H281DRAFT_00127: H281DRAFT_00127 - dihydroxyacid dehydratase, at 134,036 to 135,709 _00127 H281DRAFT_00128: H281DRAFT_00128 - transcriptional regulator, LysR family, at 135,841 to 136,830 _00128 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 133.100 kb on + strand, within H281DRAFT_00125at 133.100 kb on + strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.212 kb on - strand, within H281DRAFT_00125at 133.544 kb on + strandat 133.545 kb on - strandat 133.545 kb on - strandat 133.599 kb on - strand, within H281DRAFT_00126at 133.663 kb on + strand, within H281DRAFT_00126at 133.664 kb on - strand, within H281DRAFT_00126at 133.664 kb on - strand, within H281DRAFT_00126at 133.667 kb on + strandat 133.667 kb on + strand, within H281DRAFT_00126at 133.668 kb on - strandat 133.691 kb on - strand, within H281DRAFT_00126at 133.862 kb on + strandat 133.863 kb on - strandat 133.863 kb on - strandat 133.925 kb on + strandat 133.926 kb on - strandat 133.926 kb on - strandat 133.926 kb on - strandat 133.927 kb on + strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.972 kb on + strandat 133.972 kb on + strandat 133.973 kb on - strandat 133.977 kb on - strandat 134.083 kb on - strandat 134.105 kb on - strandat 134.105 kb on - strandat 134.106 kb on + strandat 134.107 kb on - strandat 134.404 kb on - strand, within H281DRAFT_00127at 134.498 kb on - strand, within H281DRAFT_00127at 134.586 kb on + strand, within H281DRAFT_00127at 134.587 kb on - strand, within H281DRAFT_00127at 134.996 kb on + strand, within H281DRAFT_00127at 134.996 kb on + strand, within H281DRAFT_00127at 135.060 kb on + strand, within H281DRAFT_00127at 135.061 kb on - strandat 135.061 kb on - strand, within H281DRAFT_00127at 135.114 kb on + strand, within H281DRAFT_00127at 135.114 kb on + strand, within H281DRAFT_00127at 135.114 kb on + strand, within H281DRAFT_00127at 135.115 kb on - strand, within H281DRAFT_00127at 135.276 kb on + strand, within H281DRAFT_00127at 135.277 kb on - strand, within H281DRAFT_00127at 135.277 kb on - strand, within H281DRAFT_00127at 135.282 kb on + strand, within H281DRAFT_00127at 135.283 kb on - strand, within H281DRAFT_00127at 135.283 kb on - strand, within H281DRAFT_00127at 135.433 kb on - strand, within H281DRAFT_00127at 135.472 kb on + strand, within H281DRAFT_00127at 135.639 kb on + strandat 135.639 kb on + strandat 135.640 kb on - strandat 135.642 kb on + strandat 135.643 kb on - strandat 135.643 kb on - strandat 135.643 kb on - strandat 135.643 kb on - strandat 135.802 kb on + strandat 135.836 kb on + strandat 135.837 kb on - strandat 136.162 kb on + strand, within H281DRAFT_00128at 136.162 kb on + strand, within H281DRAFT_00128at 136.163 kb on - strand, within H281DRAFT_00128at 136.526 kb on - strand, within H281DRAFT_00128at 136.537 kb on - strand, within H281DRAFT_00128at 136.546 kb on + strand, within H281DRAFT_00128at 136.660 kb on - strand, within H281DRAFT_00128

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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133,100 + H281DRAFT_00125 0.49 +0.2
133,100 + H281DRAFT_00125 0.49 +2.5
133,101 - H281DRAFT_00125 0.50 +1.2
133,101 - H281DRAFT_00125 0.50 -0.6
133,101 - H281DRAFT_00125 0.50 -0.0
133,101 - H281DRAFT_00125 0.50 +2.3
133,212 - H281DRAFT_00125 0.65 -0.2
133,544 + -0.5
133,545 - -0.0
133,545 - +0.2
133,599 - H281DRAFT_00126 0.18 +0.6
133,663 + H281DRAFT_00126 0.36 +0.4
133,664 - H281DRAFT_00126 0.37 -0.2
133,664 - H281DRAFT_00126 0.37 +0.5
133,667 + -0.6
133,667 + H281DRAFT_00126 0.37 -2.7
133,668 - +0.6
133,691 - H281DRAFT_00126 0.44 +0.5
133,862 + -1.2
133,863 - +0.1
133,863 - -0.6
133,925 + +2.5
133,926 - -0.0
133,926 - +0.2
133,926 - -0.0
133,927 + -0.4
133,928 - -0.5
133,928 - -0.6
133,928 - -1.4
133,928 - -0.5
133,972 + +1.3
133,972 + +1.1
133,973 - -0.2
133,977 - -0.2
134,083 - -1.0
134,105 - -0.1
134,105 - -0.7
134,106 + +0.1
134,107 - +2.5
134,404 - H281DRAFT_00127 0.22 -0.9
134,498 - H281DRAFT_00127 0.28 -0.4
134,586 + H281DRAFT_00127 0.33 +0.2
134,587 - H281DRAFT_00127 0.33 +0.6
134,996 + H281DRAFT_00127 0.57 -0.2
134,996 + H281DRAFT_00127 0.57 +0.1
135,060 + H281DRAFT_00127 0.61 -0.2
135,061 - +3.0
135,061 - H281DRAFT_00127 0.61 +1.0
135,114 + H281DRAFT_00127 0.64 +0.4
135,114 + H281DRAFT_00127 0.64 +0.3
135,114 + H281DRAFT_00127 0.64 +0.1
135,115 - H281DRAFT_00127 0.64 -0.5
135,276 + H281DRAFT_00127 0.74 +1.7
135,277 - H281DRAFT_00127 0.74 +0.4
135,277 - H281DRAFT_00127 0.74 -0.3
135,282 + H281DRAFT_00127 0.74 -0.5
135,283 - H281DRAFT_00127 0.74 -0.0
135,283 - H281DRAFT_00127 0.74 +0.1
135,433 - H281DRAFT_00127 0.83 +0.1
135,472 + H281DRAFT_00127 0.86 +0.1
135,639 + -0.1
135,639 + -0.7
135,640 - +0.9
135,642 + -1.4
135,643 - -0.3
135,643 - -0.8
135,643 - +0.3
135,643 - +0.6
135,802 + -1.9
135,836 + +0.2
135,837 - +0.5
136,162 + H281DRAFT_00128 0.32 -0.3
136,162 + H281DRAFT_00128 0.32 -1.9
136,163 - H281DRAFT_00128 0.33 -0.3
136,526 - H281DRAFT_00128 0.69 +0.8
136,537 - H281DRAFT_00128 0.70 -0.7
136,546 + H281DRAFT_00128 0.71 +2.0
136,660 - H281DRAFT_00128 0.83 +0.6

Or see this region's nucleotide sequence