Strain Fitness in Dechlorosoma suillum PS around Dsui_3459

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3458 and Dsui_3459 are separated by 46 nucleotidesDsui_3459 and Dsui_3460 are separated by 1 nucleotidesDsui_3460 and Dsui_3461 are separated by 150 nucleotides Dsui_3458: Dsui_3458 - septum site-determining protein MinC, at 3,721,228 to 3,722,064 _3458 Dsui_3459: Dsui_3459 - septum site-determining protein MinD, at 3,722,111 to 3,722,923 _3459 Dsui_3460: Dsui_3460 - cell division topological specificity factor MinE, at 3,722,925 to 3,723,191 _3460 Dsui_3461: Dsui_3461 - hypothetical protein, at 3,723,342 to 3,724,892 _3461 Position (kb) 3722 3723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3721.173 kb on + strandat 3721.181 kb on - strandat 3721.233 kb on - strandat 3721.502 kb on - strand, within Dsui_3458at 3721.636 kb on + strand, within Dsui_3458at 3721.770 kb on + strand, within Dsui_3458at 3721.827 kb on + strand, within Dsui_3458at 3721.874 kb on - strandat 3721.967 kb on + strand, within Dsui_3458at 3722.050 kb on + strandat 3722.057 kb on - strandat 3722.057 kb on - strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.091 kb on - strandat 3722.091 kb on - strandat 3722.184 kb on + strandat 3722.186 kb on - strandat 3722.192 kb on - strandat 3722.241 kb on + strand, within Dsui_3459at 3722.241 kb on + strand, within Dsui_3459at 3722.249 kb on - strandat 3722.346 kb on + strand, within Dsui_3459at 3722.444 kb on + strand, within Dsui_3459at 3722.590 kb on + strand, within Dsui_3459at 3722.649 kb on + strand, within Dsui_3459at 3722.649 kb on - strandat 3722.691 kb on + strand, within Dsui_3459at 3722.766 kb on + strand, within Dsui_3459at 3722.861 kb on + strandat 3723.247 kb on + strandat 3723.459 kb on - strandat 3723.759 kb on + strandat 3723.831 kb on + strand, within Dsui_3461at 3723.884 kb on + strand, within Dsui_3461at 3723.908 kb on + strandat 3723.913 kb on + strandat 3723.921 kb on - strand, within Dsui_3461

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,721,173 + -2.0
3,721,181 - -0.4
3,721,233 - -0.7
3,721,502 - Dsui_3458 0.33 -1.9
3,721,636 + Dsui_3458 0.49 +0.1
3,721,770 + Dsui_3458 0.65 +0.3
3,721,827 + Dsui_3458 0.72 -0.1
3,721,874 - -3.2
3,721,967 + Dsui_3458 0.88 -1.9
3,722,050 + +0.1
3,722,057 - -0.8
3,722,057 - -0.4
3,722,083 + +1.4
3,722,083 + +0.3
3,722,083 + +0.6
3,722,083 + +0.5
3,722,091 - -0.3
3,722,091 - +0.4
3,722,184 + -0.1
3,722,186 - -2.4
3,722,192 - -0.0
3,722,241 + Dsui_3459 0.16 +0.2
3,722,241 + Dsui_3459 0.16 +2.5
3,722,249 - -0.3
3,722,346 + Dsui_3459 0.29 +0.6
3,722,444 + Dsui_3459 0.41 -0.2
3,722,590 + Dsui_3459 0.59 +0.1
3,722,649 + Dsui_3459 0.66 +0.3
3,722,649 - -2.0
3,722,691 + Dsui_3459 0.71 +1.9
3,722,766 + Dsui_3459 0.81 +0.8
3,722,861 + +1.2
3,723,247 + -1.1
3,723,459 - -0.6
3,723,759 + +1.2
3,723,831 + Dsui_3461 0.32 -2.6
3,723,884 + Dsui_3461 0.35 -0.7
3,723,908 + -2.0
3,723,913 + -2.2
3,723,921 - Dsui_3461 0.37 +0.0

Or see this region's nucleotide sequence