Strain Fitness in Dechlorosoma suillum PS around Dsui_3105

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3104 and Dsui_3105 are separated by 54 nucleotidesDsui_3105 and Dsui_3106 are separated by 291 nucleotidesDsui_3106 and Dsui_3107 overlap by 8 nucleotides Dsui_3104: Dsui_3104 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,322,174 to 3,324,675 _3104 Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046 _3105 Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718 _3106 Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349 _3107 Position (kb) 3324 3325 3326 3327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3323.749 kb on + strand, within Dsui_3104at 3323.817 kb on - strand, within Dsui_3104at 3323.825 kb on - strand, within Dsui_3104at 3324.226 kb on - strand, within Dsui_3104at 3324.242 kb on + strand, within Dsui_3104at 3324.295 kb on - strand, within Dsui_3104at 3324.302 kb on - strand, within Dsui_3104at 3324.375 kb on - strand, within Dsui_3104at 3324.432 kb on + strandat 3324.432 kb on + strandat 3324.440 kb on - strandat 3324.523 kb on - strandat 3324.609 kb on - strandat 3324.700 kb on + strandat 3324.871 kb on - strand, within Dsui_3105at 3324.943 kb on - strand, within Dsui_3105at 3325.164 kb on + strand, within Dsui_3105at 3325.172 kb on - strand, within Dsui_3105at 3325.175 kb on - strand, within Dsui_3105at 3325.245 kb on - strand, within Dsui_3105at 3325.247 kb on + strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.255 kb on - strand, within Dsui_3105at 3325.257 kb on + strand, within Dsui_3105at 3325.534 kb on - strand, within Dsui_3105at 3325.736 kb on + strand, within Dsui_3105at 3325.744 kb on - strand, within Dsui_3105at 3325.791 kb on + strand, within Dsui_3105at 3325.798 kb on + strand, within Dsui_3105at 3325.799 kb on - strand, within Dsui_3105at 3326.076 kb on + strandat 3326.084 kb on - strandat 3326.084 kb on - strandat 3326.168 kb on - strandat 3326.227 kb on - strandat 3326.270 kb on - strandat 3326.344 kb on - strandat 3326.513 kb on - strand, within Dsui_3106at 3326.572 kb on + strand, within Dsui_3106at 3326.581 kb on + strandat 3326.647 kb on - strand, within Dsui_3106at 3326.903 kb on - strand, within Dsui_3107at 3326.908 kb on + strandat 3326.912 kb on - strand, within Dsui_3107at 3326.974 kb on - strand, within Dsui_3107at 3327.039 kb on - strand, within Dsui_3107

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,323,749 + Dsui_3104 0.63 +2.2
3,323,817 - Dsui_3104 0.66 +0.9
3,323,825 - Dsui_3104 0.66 +0.6
3,324,226 - Dsui_3104 0.82 +0.5
3,324,242 + Dsui_3104 0.83 +1.2
3,324,295 - Dsui_3104 0.85 +1.7
3,324,302 - Dsui_3104 0.85 -0.2
3,324,375 - Dsui_3104 0.88 +1.5
3,324,432 + +1.6
3,324,432 + +1.1
3,324,440 - +1.1
3,324,523 - +0.5
3,324,609 - +0.8
3,324,700 + +0.7
3,324,871 - Dsui_3105 0.11 +0.9
3,324,943 - Dsui_3105 0.16 +0.3
3,325,164 + Dsui_3105 0.33 -0.3
3,325,172 - Dsui_3105 0.34 -0.6
3,325,175 - Dsui_3105 0.34 +0.7
3,325,245 - Dsui_3105 0.39 +1.6
3,325,247 + Dsui_3105 0.39 -1.6
3,325,255 - Dsui_3105 0.40 +0.6
3,325,255 - Dsui_3105 0.40 +0.6
3,325,255 - Dsui_3105 0.40 -2.2
3,325,257 + Dsui_3105 0.40 -0.2
3,325,534 - Dsui_3105 0.61 +0.8
3,325,736 + Dsui_3105 0.76 +0.2
3,325,744 - Dsui_3105 0.77 -0.2
3,325,791 + Dsui_3105 0.81 -1.3
3,325,798 + Dsui_3105 0.81 -1.4
3,325,799 - Dsui_3105 0.81 +0.2
3,326,076 + +0.8
3,326,084 - +0.9
3,326,084 - +0.9
3,326,168 - +0.8
3,326,227 - +1.2
3,326,270 - +1.4
3,326,344 - +0.5
3,326,513 - Dsui_3106 0.46 +1.2
3,326,572 + Dsui_3106 0.61 -1.2
3,326,581 + -3.2
3,326,647 - Dsui_3106 0.81 +1.2
3,326,903 - Dsui_3107 0.30 +0.1
3,326,908 + -0.9
3,326,912 - Dsui_3107 0.31 +0.4
3,326,974 - Dsui_3107 0.41 -0.2
3,327,039 - Dsui_3107 0.51 +0.2

Or see this region's nucleotide sequence