Strain Fitness in Dechlorosoma suillum PS around Dsui_3029

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3027 and Dsui_3028 are separated by 12 nucleotidesDsui_3028 and Dsui_3029 overlap by 4 nucleotidesDsui_3029 and Dsui_3030 overlap by 4 nucleotides Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675 _3027 Dsui_3028: Dsui_3028 - coenzyme F420-reducing hydrogenase, gamma subunit, at 3,239,688 to 3,240,245 _3028 Dsui_3029: Dsui_3029 - NADH:ubiquinone oxidoreductase chain G-like protein, at 3,240,242 to 3,240,955 _3029 Dsui_3030: Dsui_3030 - NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit, at 3,240,952 to 3,242,760 _3030 Position (kb) 3240 3241Strain fitness (log2 ratio) -3 -2 -1 0 1at 3239.259 kb on - strand, within Dsui_3027at 3239.417 kb on - strand, within Dsui_3027at 3239.599 kb on + strandat 3239.600 kb on - strandat 3239.832 kb on - strand, within Dsui_3028at 3239.913 kb on - strand, within Dsui_3028at 3239.939 kb on - strand, within Dsui_3028at 3240.113 kb on - strand, within Dsui_3028at 3240.364 kb on - strand, within Dsui_3029at 3240.414 kb on + strand, within Dsui_3029at 3240.695 kb on - strand, within Dsui_3029at 3240.726 kb on + strandat 3240.979 kb on - strandat 3241.046 kb on - strandat 3241.142 kb on - strand, within Dsui_3030at 3241.583 kb on - strand, within Dsui_3030at 3241.612 kb on - strand, within Dsui_3030at 3241.861 kb on + strandat 3241.868 kb on + strandat 3241.879 kb on - strand, within Dsui_3030at 3241.929 kb on - strand, within Dsui_3030

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,239,259 - Dsui_3027 0.71 -1.0
3,239,417 - Dsui_3027 0.82 +1.4
3,239,599 + -2.4
3,239,600 - +0.5
3,239,832 - Dsui_3028 0.26 -1.0
3,239,913 - Dsui_3028 0.40 +0.6
3,239,939 - Dsui_3028 0.45 -0.1
3,240,113 - Dsui_3028 0.76 +0.5
3,240,364 - Dsui_3029 0.17 +0.6
3,240,414 + Dsui_3029 0.24 -3.4
3,240,695 - Dsui_3029 0.63 +1.0
3,240,726 + -2.5
3,240,979 - -1.0
3,241,046 - -2.5
3,241,142 - Dsui_3030 0.11 -0.7
3,241,583 - Dsui_3030 0.35 -0.0
3,241,612 - Dsui_3030 0.36 -1.9
3,241,861 + -3.5
3,241,868 + -2.2
3,241,879 - Dsui_3030 0.51 -0.7
3,241,929 - Dsui_3030 0.54 -1.7

Or see this region's nucleotide sequence