Strain Fitness in Dechlorosoma suillum PS around Dsui_2946

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2944 and Dsui_2945 are separated by 313 nucleotidesDsui_2945 and Dsui_2946 overlap by 1 nucleotidesDsui_2946 and Dsui_2947 overlap by 4 nucleotidesDsui_2947 and Dsui_2948 are separated by 170 nucleotides Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684 _2944 Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486 _2945 Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916 _2946 Dsui_2947: Dsui_2947 - putative metal-dependent hydrolase, at 3,153,913 to 3,154,479 _2947 Dsui_2948: Dsui_2948 - RNA polymerase sigma factor, sigma-70 family, at 3,154,650 to 3,155,147 _2948 Position (kb) 3152 3153 3154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3151.557 kb on + strandat 3151.617 kb on - strandat 3151.629 kb on - strandat 3151.786 kb on - strandat 3151.811 kb on + strandat 3151.870 kb on - strandat 3151.907 kb on - strandat 3151.950 kb on - strandat 3151.955 kb on + strandat 3151.963 kb on + strandat 3151.975 kb on + strandat 3151.983 kb on - strandat 3152.125 kb on + strand, within Dsui_2945at 3152.174 kb on - strandat 3152.347 kb on - strandat 3152.353 kb on + strand, within Dsui_2945at 3152.372 kb on + strand, within Dsui_2945at 3152.407 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.408 kb on + strand, within Dsui_2945at 3152.437 kb on - strandat 3152.658 kb on + strand, within Dsui_2946at 3152.712 kb on + strand, within Dsui_2946at 3152.712 kb on + strand, within Dsui_2946at 3152.730 kb on - strandat 3152.767 kb on + strand, within Dsui_2946at 3152.778 kb on + strand, within Dsui_2946at 3152.810 kb on - strandat 3152.961 kb on + strand, within Dsui_2946at 3152.965 kb on + strand, within Dsui_2946at 3152.993 kb on - strandat 3153.070 kb on + strand, within Dsui_2946at 3153.308 kb on - strand, within Dsui_2946at 3153.308 kb on - strandat 3153.308 kb on - strandat 3153.563 kb on - strand, within Dsui_2946at 3153.693 kb on + strand, within Dsui_2946at 3153.819 kb on + strandat 3153.882 kb on - strandat 3153.981 kb on - strand, within Dsui_2947at 3154.021 kb on + strand, within Dsui_2947at 3154.079 kb on + strand, within Dsui_2947at 3154.195 kb on - strand, within Dsui_2947at 3154.233 kb on + strand, within Dsui_2947at 3154.282 kb on + strand, within Dsui_2947at 3154.315 kb on + strand, within Dsui_2947at 3154.323 kb on - strand, within Dsui_2947at 3154.394 kb on - strandat 3154.540 kb on - strandat 3154.540 kb on - strandat 3154.601 kb on + strandat 3154.609 kb on - strandat 3154.653 kb on + strandat 3154.690 kb on - strandat 3154.690 kb on - strandat 3154.690 kb on - strandat 3154.824 kb on - strand, within Dsui_2948at 3154.859 kb on - strandat 3154.889 kb on - strand, within Dsui_2948at 3154.894 kb on - strand, within Dsui_2948at 3154.899 kb on + strand, within Dsui_2948

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,151,557 + +1.4
3,151,617 - -0.3
3,151,629 - +1.9
3,151,786 - +0.8
3,151,811 + -0.2
3,151,870 - -2.8
3,151,907 - +1.0
3,151,950 - -2.0
3,151,955 + +0.4
3,151,963 + +1.4
3,151,975 + +0.4
3,151,983 - +0.5
3,152,125 + Dsui_2945 0.26 +0.0
3,152,174 - +1.1
3,152,347 - -1.0
3,152,353 + Dsui_2945 0.73 +1.1
3,152,372 + Dsui_2945 0.76 -1.5
3,152,407 + Dsui_2945 0.84 +0.8
3,152,408 + Dsui_2945 0.84 +0.8
3,152,408 + Dsui_2945 0.84 +2.0
3,152,437 - +0.9
3,152,658 + Dsui_2946 0.12 -0.9
3,152,712 + Dsui_2946 0.16 +1.0
3,152,712 + Dsui_2946 0.16 +1.2
3,152,730 - -0.5
3,152,767 + Dsui_2946 0.20 +1.0
3,152,778 + Dsui_2946 0.20 +2.3
3,152,810 - -0.3
3,152,961 + Dsui_2946 0.33 +0.8
3,152,965 + Dsui_2946 0.33 +0.7
3,152,993 - -1.4
3,153,070 + Dsui_2946 0.41 -0.4
3,153,308 - Dsui_2946 0.57 +0.6
3,153,308 - -1.2
3,153,308 - -2.1
3,153,563 - Dsui_2946 0.75 +0.8
3,153,693 + Dsui_2946 0.84 -0.4
3,153,819 + -0.6
3,153,882 - -0.7
3,153,981 - Dsui_2947 0.12 +0.0
3,154,021 + Dsui_2947 0.19 +0.4
3,154,079 + Dsui_2947 0.29 +0.7
3,154,195 - Dsui_2947 0.50 -2.0
3,154,233 + Dsui_2947 0.56 +0.0
3,154,282 + Dsui_2947 0.65 +0.7
3,154,315 + Dsui_2947 0.71 +0.1
3,154,323 - Dsui_2947 0.72 +0.0
3,154,394 - +0.1
3,154,540 - +0.1
3,154,540 - -0.9
3,154,601 + +1.5
3,154,609 - -0.0
3,154,653 + +0.9
3,154,690 - -2.9
3,154,690 - +0.6
3,154,690 - -1.4
3,154,824 - Dsui_2948 0.35 -3.4
3,154,859 - -2.1
3,154,889 - Dsui_2948 0.48 -0.0
3,154,894 - Dsui_2948 0.49 -0.7
3,154,899 + Dsui_2948 0.50 +0.5

Or see this region's nucleotide sequence