Strain Fitness in Dechlorosoma suillum PS around Dsui_2707

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2705 and Dsui_2706 are separated by 7 nucleotidesDsui_2706 and Dsui_2707 are separated by 21 nucleotidesDsui_2707 and Dsui_2708 are separated by 56 nucleotides Dsui_2705: Dsui_2705 - permease, at 2,861,719 to 2,863,008 _2705 Dsui_2706: Dsui_2706 - adenine phosphoribosyltransferase, at 2,863,016 to 2,863,543 _2706 Dsui_2707: Dsui_2707 - putative permease, at 2,863,565 to 2,864,470 _2707 Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732 _2708 Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2862.573 kb on + strand, within Dsui_2705at 2862.593 kb on + strand, within Dsui_2705at 2862.736 kb on + strand, within Dsui_2705at 2862.765 kb on + strand, within Dsui_2705at 2862.835 kb on - strandat 2862.948 kb on + strandat 2862.978 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.013 kb on + strandat 2863.015 kb on + strandat 2863.063 kb on + strandat 2863.082 kb on - strandat 2863.097 kb on + strand, within Dsui_2706at 2863.155 kb on + strand, within Dsui_2706at 2863.217 kb on + strand, within Dsui_2706at 2863.225 kb on - strandat 2863.268 kb on + strand, within Dsui_2706at 2863.294 kb on + strandat 2863.294 kb on + strand, within Dsui_2706at 2863.341 kb on - strand, within Dsui_2706at 2863.483 kb on + strand, within Dsui_2706at 2863.529 kb on - strandat 2863.631 kb on - strandat 2863.740 kb on + strandat 2863.759 kb on + strand, within Dsui_2707at 2863.772 kb on - strand, within Dsui_2707at 2863.844 kb on + strand, within Dsui_2707at 2863.926 kb on + strand, within Dsui_2707at 2863.934 kb on - strandat 2863.948 kb on + strandat 2863.971 kb on - strand, within Dsui_2707at 2864.099 kb on + strandat 2864.130 kb on + strand, within Dsui_2707at 2864.138 kb on - strand, within Dsui_2707at 2864.153 kb on - strand, within Dsui_2707at 2864.310 kb on + strand, within Dsui_2707at 2864.345 kb on + strand, within Dsui_2707at 2864.383 kb on - strandat 2864.383 kb on - strandat 2864.393 kb on - strandat 2864.393 kb on - strandat 2864.393 kb on - strandat 2864.505 kb on + strandat 2864.505 kb on + strandat 2864.513 kb on - strandat 2864.548 kb on + strandat 2864.561 kb on - strandat 2864.583 kb on + strandat 2864.583 kb on + strandat 2864.583 kb on + strandat 2864.591 kb on - strandat 2864.593 kb on + strandat 2864.628 kb on + strandat 2864.636 kb on - strandat 2864.664 kb on + strand, within Dsui_2708at 2864.726 kb on + strand, within Dsui_2708at 2864.726 kb on + strand, within Dsui_2708at 2864.734 kb on - strand, within Dsui_2708at 2864.913 kb on + strand, within Dsui_2708at 2864.937 kb on + strand, within Dsui_2708at 2864.963 kb on + strand, within Dsui_2708at 2865.006 kb on + strand, within Dsui_2708at 2865.014 kb on - strand, within Dsui_2708at 2865.081 kb on - strandat 2865.081 kb on - strandat 2865.081 kb on - strandat 2865.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,862,573 + Dsui_2705 0.66 +1.4
2,862,593 + Dsui_2705 0.68 +1.4
2,862,736 + Dsui_2705 0.79 +1.3
2,862,765 + Dsui_2705 0.81 +0.9
2,862,835 - +3.1
2,862,948 + +0.6
2,862,978 + +0.9
2,863,002 + -0.3
2,863,002 + +1.2
2,863,002 + -2.1
2,863,002 + -0.1
2,863,010 - -2.0
2,863,010 - -1.0
2,863,010 - -3.4
2,863,010 - -3.2
2,863,010 - -1.6
2,863,010 - -2.6
2,863,013 + +1.6
2,863,015 + +0.3
2,863,063 + -2.6
2,863,082 - -2.1
2,863,097 + Dsui_2706 0.15 -2.6
2,863,155 + Dsui_2706 0.26 -3.8
2,863,217 + Dsui_2706 0.38 -1.3
2,863,225 - -1.3
2,863,268 + Dsui_2706 0.48 -4.4
2,863,294 + -1.4
2,863,294 + Dsui_2706 0.53 -3.0
2,863,341 - Dsui_2706 0.62 -3.4
2,863,483 + Dsui_2706 0.88 -4.1
2,863,529 - -2.9
2,863,631 - +1.2
2,863,740 + +0.6
2,863,759 + Dsui_2707 0.21 +1.2
2,863,772 - Dsui_2707 0.23 -1.6
2,863,844 + Dsui_2707 0.31 -1.1
2,863,926 + Dsui_2707 0.40 +1.1
2,863,934 - +1.6
2,863,948 + -0.8
2,863,971 - Dsui_2707 0.45 +0.0
2,864,099 + -0.5
2,864,130 + Dsui_2707 0.62 +0.2
2,864,138 - Dsui_2707 0.63 +0.5
2,864,153 - Dsui_2707 0.65 +1.4
2,864,310 + Dsui_2707 0.82 -0.4
2,864,345 + Dsui_2707 0.86 -2.5
2,864,383 - +1.1
2,864,383 - -1.4
2,864,393 - +0.4
2,864,393 - +0.7
2,864,393 - +1.2
2,864,505 + +1.7
2,864,505 + +1.4
2,864,513 - +1.8
2,864,548 + +0.8
2,864,561 - +0.9
2,864,583 + +0.7
2,864,583 + +2.1
2,864,583 + +0.9
2,864,591 - +0.1
2,864,593 + +2.8
2,864,628 + +1.5
2,864,636 - +1.0
2,864,664 + Dsui_2708 0.11 +0.9
2,864,726 + Dsui_2708 0.17 +0.9
2,864,726 + Dsui_2708 0.17 +3.9
2,864,734 - Dsui_2708 0.17 -1.2
2,864,913 + Dsui_2708 0.32 +0.9
2,864,937 + Dsui_2708 0.34 +1.4
2,864,963 + Dsui_2708 0.36 +0.5
2,865,006 + Dsui_2708 0.40 +0.4
2,865,014 - Dsui_2708 0.40 -1.0
2,865,081 - +1.6
2,865,081 - -0.6
2,865,081 - -2.3
2,865,321 - +0.7

Or see this region's nucleotide sequence