Strain Fitness in Dechlorosoma suillum PS around Dsui_2550

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2548 and Dsui_2549 are separated by 40 nucleotidesDsui_2549 and Dsui_2550 are separated by 134 nucleotidesDsui_2550 and Dsui_2551 are separated by 67 nucleotidesDsui_2551 and Dsui_2552 are separated by 172 nucleotidesDsui_2552 and Dsui_2553 overlap by 4 nucleotides Dsui_2548: Dsui_2548 - hypothetical protein, at 2,702,078 to 2,702,518 _2548 Dsui_2549: Dsui_2549 - hypothetical protein, at 2,702,559 to 2,702,996 _2549 Dsui_2550: Dsui_2550 - Protein of unknown function (DUF2726), at 2,703,131 to 2,703,694 _2550 Dsui_2551: Dsui_2551 - Helix-destabilising protein, at 2,703,762 to 2,704,055 _2551 Dsui_2552: Dsui_2552 - hypothetical protein, at 2,704,228 to 2,704,503 _2552 Dsui_2553: Dsui_2553 - Phage X family/Phage replication protein CRI, at 2,704,500 to 2,705,582 _2553 Position (kb) 2703 2704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2702.206 kb on - strand, within Dsui_2548at 2702.225 kb on - strand, within Dsui_2548at 2702.252 kb on + strand, within Dsui_2548at 2702.387 kb on + strand, within Dsui_2548at 2702.445 kb on - strand, within Dsui_2548at 2702.646 kb on + strand, within Dsui_2549at 2702.749 kb on + strand, within Dsui_2549at 2702.803 kb on - strand, within Dsui_2549at 2702.804 kb on - strand, within Dsui_2549at 2702.830 kb on + strand, within Dsui_2549at 2702.830 kb on + strandat 2702.830 kb on + strand, within Dsui_2549at 2702.835 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.838 kb on - strand, within Dsui_2549at 2702.882 kb on - strand, within Dsui_2549at 2702.915 kb on + strand, within Dsui_2549at 2702.979 kb on + strandat 2703.100 kb on + strandat 2703.100 kb on - strandat 2703.104 kb on + strandat 2703.104 kb on + strandat 2703.104 kb on + strandat 2703.122 kb on - strandat 2703.158 kb on - strandat 2703.203 kb on - strand, within Dsui_2550at 2703.222 kb on + strand, within Dsui_2550at 2703.222 kb on + strand, within Dsui_2550at 2703.230 kb on - strand, within Dsui_2550at 2703.240 kb on + strandat 2703.248 kb on - strand, within Dsui_2550at 2703.248 kb on - strand, within Dsui_2550at 2703.294 kb on - strand, within Dsui_2550at 2703.294 kb on - strand, within Dsui_2550at 2703.313 kb on + strand, within Dsui_2550at 2703.325 kb on + strandat 2703.325 kb on + strandat 2703.328 kb on - strand, within Dsui_2550at 2703.328 kb on - strand, within Dsui_2550at 2703.335 kb on + strand, within Dsui_2550at 2703.338 kb on - strand, within Dsui_2550at 2703.340 kb on + strand, within Dsui_2550at 2703.343 kb on - strand, within Dsui_2550at 2703.343 kb on - strand, within Dsui_2550at 2703.348 kb on + strandat 2703.348 kb on - strand, within Dsui_2550at 2703.399 kb on + strandat 2703.407 kb on - strand, within Dsui_2550at 2703.455 kb on - strand, within Dsui_2550at 2703.455 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550at 2703.465 kb on - strand, within Dsui_2550at 2703.542 kb on - strand, within Dsui_2550at 2703.605 kb on - strand, within Dsui_2550at 2703.786 kb on + strandat 2703.794 kb on - strand, within Dsui_2551at 2703.794 kb on - strand, within Dsui_2551at 2703.794 kb on - strand, within Dsui_2551at 2703.830 kb on + strandat 2703.838 kb on - strand, within Dsui_2551at 2703.876 kb on - strand, within Dsui_2551at 2703.946 kb on - strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.963 kb on - strand, within Dsui_2551at 2703.963 kb on - strand, within Dsui_2551at 2704.040 kb on + strandat 2704.048 kb on - strandat 2704.065 kb on - strandat 2704.065 kb on - strandat 2704.065 kb on - strandat 2704.145 kb on - strandat 2704.248 kb on + strandat 2704.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,702,206 - Dsui_2548 0.29 +1.7
2,702,225 - Dsui_2548 0.33 +1.1
2,702,252 + Dsui_2548 0.39 +0.5
2,702,387 + Dsui_2548 0.70 +1.2
2,702,445 - Dsui_2548 0.83 +1.6
2,702,646 + Dsui_2549 0.20 +0.2
2,702,749 + Dsui_2549 0.43 -2.5
2,702,803 - Dsui_2549 0.56 -0.2
2,702,804 - Dsui_2549 0.56 -1.1
2,702,830 + Dsui_2549 0.62 -1.9
2,702,830 + +1.5
2,702,830 + Dsui_2549 0.62 -1.2
2,702,835 - Dsui_2549 0.63 +0.1
2,702,838 - Dsui_2549 0.64 -1.3
2,702,838 - Dsui_2549 0.64 -1.3
2,702,838 - Dsui_2549 0.64 -1.3
2,702,838 - Dsui_2549 0.64 -0.1
2,702,882 - Dsui_2549 0.74 -1.0
2,702,915 + Dsui_2549 0.81 -2.4
2,702,979 + -0.5
2,703,100 + +2.4
2,703,100 - +1.3
2,703,104 + +1.5
2,703,104 + +1.0
2,703,104 + +0.7
2,703,122 - -2.4
2,703,158 - +0.5
2,703,203 - Dsui_2550 0.13 -2.1
2,703,222 + Dsui_2550 0.16 +1.5
2,703,222 + Dsui_2550 0.16 +1.5
2,703,230 - Dsui_2550 0.18 -2.9
2,703,240 + -0.9
2,703,248 - Dsui_2550 0.21 +0.3
2,703,248 - Dsui_2550 0.21 -2.4
2,703,294 - Dsui_2550 0.29 +2.0
2,703,294 - Dsui_2550 0.29 +1.9
2,703,313 + Dsui_2550 0.32 -2.2
2,703,325 + +1.5
2,703,325 + -1.5
2,703,328 - Dsui_2550 0.35 +0.1
2,703,328 - Dsui_2550 0.35 +0.8
2,703,335 + Dsui_2550 0.36 +2.5
2,703,338 - Dsui_2550 0.37 -3.1
2,703,340 + Dsui_2550 0.37 -3.1
2,703,343 - Dsui_2550 0.38 -3.0
2,703,343 - Dsui_2550 0.38 -0.9
2,703,348 + +0.6
2,703,348 - Dsui_2550 0.38 -0.9
2,703,399 + -1.4
2,703,407 - Dsui_2550 0.49 +0.9
2,703,455 - Dsui_2550 0.57 -2.9
2,703,455 - Dsui_2550 0.57 -1.5
2,703,465 - Dsui_2550 0.59 -0.1
2,703,465 - Dsui_2550 0.59 -1.9
2,703,465 - Dsui_2550 0.59 +0.4
2,703,542 - Dsui_2550 0.73 -2.1
2,703,605 - Dsui_2550 0.84 +1.0
2,703,786 + -2.2
2,703,794 - Dsui_2551 0.11 -0.0
2,703,794 - Dsui_2551 0.11 -0.1
2,703,794 - Dsui_2551 0.11 -0.3
2,703,830 + -1.4
2,703,838 - Dsui_2551 0.26 +0.6
2,703,876 - Dsui_2551 0.39 -0.6
2,703,946 - Dsui_2551 0.63 -0.2
2,703,955 + Dsui_2551 0.66 -1.5
2,703,955 + Dsui_2551 0.66 -2.1
2,703,955 + Dsui_2551 0.66 -1.5
2,703,963 - Dsui_2551 0.68 +0.6
2,703,963 - Dsui_2551 0.68 -1.5
2,704,040 + -1.9
2,704,048 - +2.5
2,704,065 - -2.1
2,704,065 - -2.9
2,704,065 - -0.6
2,704,145 - +0.2
2,704,248 + -2.5
2,704,606 - -1.5

Or see this region's nucleotide sequence