Strain Fitness in Dechlorosoma suillum PS around Dsui_2546

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2544 and Dsui_2545 are separated by 14 nucleotidesDsui_2545 and Dsui_2546 are separated by 27 nucleotidesDsui_2546 and Dsui_2547 are separated by 250 nucleotides Dsui_2544: Dsui_2544 - disulfide bond chaperone, at 2,695,537 to 2,696,394 _2544 Dsui_2545: Dsui_2545 - transcriptional regulator, Spx/MgsR family, at 2,696,409 to 2,696,756 _2545 Dsui_2546: Dsui_2546 - transcriptional accessory protein, at 2,696,784 to 2,699,099 _2546 Dsui_2547: Dsui_2547 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,699,350 to 2,702,019 _2547 Position (kb) 2696 2697 2698 2699 2700Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2695.865 kb on + strandat 2695.919 kb on - strand, within Dsui_2544at 2696.053 kb on + strand, within Dsui_2544at 2696.120 kb on + strand, within Dsui_2544at 2696.204 kb on - strand, within Dsui_2544at 2696.379 kb on + strandat 2696.503 kb on - strand, within Dsui_2545at 2696.532 kb on - strand, within Dsui_2545at 2696.589 kb on - strand, within Dsui_2545at 2696.693 kb on + strand, within Dsui_2545at 2696.741 kb on + strandat 2696.746 kb on + strandat 2696.746 kb on + strandat 2696.747 kb on + strandat 2696.804 kb on + strandat 2697.003 kb on - strandat 2697.088 kb on - strand, within Dsui_2546at 2697.242 kb on - strand, within Dsui_2546at 2697.289 kb on + strand, within Dsui_2546at 2697.370 kb on + strand, within Dsui_2546at 2697.448 kb on - strand, within Dsui_2546at 2697.593 kb on - strand, within Dsui_2546at 2697.623 kb on + strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.626 kb on - strand, within Dsui_2546at 2697.641 kb on - strand, within Dsui_2546at 2697.850 kb on - strand, within Dsui_2546at 2697.852 kb on + strand, within Dsui_2546at 2697.852 kb on + strand, within Dsui_2546at 2697.992 kb on + strand, within Dsui_2546at 2698.033 kb on + strand, within Dsui_2546at 2698.078 kb on - strand, within Dsui_2546at 2698.298 kb on - strand, within Dsui_2546at 2698.298 kb on - strand, within Dsui_2546at 2698.378 kb on - strand, within Dsui_2546at 2698.378 kb on - strand, within Dsui_2546at 2698.378 kb on - strand, within Dsui_2546at 2698.402 kb on - strand, within Dsui_2546at 2698.621 kb on - strand, within Dsui_2546at 2698.633 kb on + strand, within Dsui_2546at 2698.633 kb on + strand, within Dsui_2546at 2698.633 kb on + strand, within Dsui_2546at 2698.641 kb on - strand, within Dsui_2546at 2698.641 kb on - strand, within Dsui_2546at 2698.641 kb on - strand, within Dsui_2546at 2698.761 kb on - strand, within Dsui_2546at 2698.790 kb on + strand, within Dsui_2546at 2698.954 kb on - strandat 2699.043 kb on - strandat 2699.094 kb on - strandat 2699.207 kb on + strandat 2699.347 kb on + strandat 2699.421 kb on + strandat 2699.446 kb on - strandat 2699.446 kb on - strandat 2699.446 kb on - strandat 2699.456 kb on - strandat 2699.474 kb on + strandat 2699.510 kb on + strandat 2699.549 kb on + strandat 2699.600 kb on - strandat 2699.624 kb on + strand, within Dsui_2547at 2699.634 kb on + strand, within Dsui_2547at 2699.669 kb on + strand, within Dsui_2547at 2699.821 kb on + strand, within Dsui_2547at 2699.846 kb on + strand, within Dsui_2547at 2699.859 kb on + strand, within Dsui_2547at 2699.882 kb on + strand, within Dsui_2547at 2699.886 kb on + strand, within Dsui_2547at 2699.886 kb on + strand, within Dsui_2547at 2699.887 kb on + strand, within Dsui_2547at 2699.890 kb on - strand, within Dsui_2547at 2699.897 kb on + strand, within Dsui_2547at 2699.939 kb on + strand, within Dsui_2547at 2700.021 kb on + strand, within Dsui_2547at 2700.022 kb on + strand, within Dsui_2547

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,695,865 + +1.4
2,695,919 - Dsui_2544 0.45 +0.8
2,696,053 + Dsui_2544 0.60 +0.4
2,696,120 + Dsui_2544 0.68 +1.7
2,696,204 - Dsui_2544 0.78 +2.0
2,696,379 + +0.8
2,696,503 - Dsui_2545 0.27 +1.1
2,696,532 - Dsui_2545 0.35 +1.9
2,696,589 - Dsui_2545 0.52 +1.0
2,696,693 + Dsui_2545 0.82 +1.7
2,696,741 + +0.6
2,696,746 + +1.2
2,696,746 + +1.0
2,696,747 + -0.9
2,696,804 + +0.1
2,697,003 - +0.1
2,697,088 - Dsui_2546 0.13 +0.4
2,697,242 - Dsui_2546 0.20 +0.3
2,697,289 + Dsui_2546 0.22 -0.6
2,697,370 + Dsui_2546 0.25 -1.0
2,697,448 - Dsui_2546 0.29 -0.6
2,697,593 - Dsui_2546 0.35 +0.1
2,697,623 + Dsui_2546 0.36 -0.3
2,697,626 - Dsui_2546 0.36 -3.1
2,697,626 - Dsui_2546 0.36 -0.3
2,697,626 - Dsui_2546 0.36 -1.1
2,697,641 - Dsui_2546 0.37 +2.8
2,697,850 - Dsui_2546 0.46 -2.9
2,697,852 + Dsui_2546 0.46 -3.7
2,697,852 + Dsui_2546 0.46 -2.4
2,697,992 + Dsui_2546 0.52 -2.1
2,698,033 + Dsui_2546 0.54 -1.2
2,698,078 - Dsui_2546 0.56 +0.0
2,698,298 - Dsui_2546 0.65 +1.1
2,698,298 - Dsui_2546 0.65 +0.7
2,698,378 - Dsui_2546 0.69 -0.6
2,698,378 - Dsui_2546 0.69 -0.4
2,698,378 - Dsui_2546 0.69 +0.1
2,698,402 - Dsui_2546 0.70 +0.2
2,698,621 - Dsui_2546 0.79 -0.9
2,698,633 + Dsui_2546 0.80 -1.2
2,698,633 + Dsui_2546 0.80 +0.4
2,698,633 + Dsui_2546 0.80 -0.6
2,698,641 - Dsui_2546 0.80 -0.2
2,698,641 - Dsui_2546 0.80 +0.2
2,698,641 - Dsui_2546 0.80 +0.7
2,698,761 - Dsui_2546 0.85 -2.0
2,698,790 + Dsui_2546 0.87 -2.4
2,698,954 - +0.2
2,699,043 - +2.0
2,699,094 - +0.1
2,699,207 + -1.9
2,699,347 + -3.2
2,699,421 + +2.1
2,699,446 - -3.2
2,699,446 - -3.1
2,699,446 - -3.3
2,699,456 - -1.4
2,699,474 + +0.1
2,699,510 + +0.9
2,699,549 + +0.3
2,699,600 - -0.2
2,699,624 + Dsui_2547 0.10 +0.5
2,699,634 + Dsui_2547 0.11 +2.8
2,699,669 + Dsui_2547 0.12 +1.0
2,699,821 + Dsui_2547 0.18 -0.3
2,699,846 + Dsui_2547 0.19 +0.5
2,699,859 + Dsui_2547 0.19 -0.3
2,699,882 + Dsui_2547 0.20 +0.4
2,699,886 + Dsui_2547 0.20 +1.0
2,699,886 + Dsui_2547 0.20 +1.0
2,699,887 + Dsui_2547 0.20 +0.2
2,699,890 - Dsui_2547 0.20 -2.4
2,699,897 + Dsui_2547 0.20 +0.4
2,699,939 + Dsui_2547 0.22 +0.2
2,700,021 + Dsui_2547 0.25 +0.7
2,700,022 + Dsui_2547 0.25 +1.1

Or see this region's nucleotide sequence