Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2412 and Dsui_2413 are separated by 33 nucleotides Dsui_2413 and Dsui_2414 are separated by 102 nucleotides Dsui_2414 and Dsui_2415 are separated by 168 nucleotides
Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304
_2412
Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711
_2413
Dsui_2414: Dsui_2414 - hypothetical protein, at 2,567,814 to 2,568,419
_2414
Dsui_2415: Dsui_2415 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 2,568,588 to 2,571,089
_2415
Position (kb)
2566
2567
2568 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2565.352 kb on + strand, within Dsui_2412 at 2565.408 kb on + strand, within Dsui_2412 at 2565.424 kb on + strand at 2565.523 kb on + strand, within Dsui_2412 at 2565.597 kb on + strand at 2565.639 kb on + strand, within Dsui_2412 at 2565.670 kb on + strand, within Dsui_2412 at 2565.685 kb on + strand, within Dsui_2412 at 2565.686 kb on - strand at 2565.793 kb on + strand, within Dsui_2412 at 2565.815 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.990 kb on - strand at 2566.170 kb on + strand at 2566.232 kb on + strand at 2566.326 kb on - strand at 2566.355 kb on + strand at 2566.436 kb on + strand at 2566.530 kb on + strand, within Dsui_2413 at 2566.558 kb on + strand, within Dsui_2413 at 2566.576 kb on - strand at 2566.591 kb on - strand at 2566.669 kb on + strand, within Dsui_2413 at 2566.908 kb on + strand, within Dsui_2413 at 2567.153 kb on + strand, within Dsui_2413 at 2567.200 kb on + strand, within Dsui_2413 at 2567.355 kb on + strand, within Dsui_2413 at 2567.419 kb on + strand, within Dsui_2413 at 2567.420 kb on + strand, within Dsui_2413 at 2567.716 kb on + strand at 2567.811 kb on + strand at 2567.957 kb on + strand at 2567.965 kb on + strand, within Dsui_2414 at 2567.965 kb on + strand, within Dsui_2414 at 2567.984 kb on - strand at 2567.984 kb on - strand at 2568.015 kb on + strand at 2568.159 kb on - strand at 2568.219 kb on + strand at 2568.229 kb on + strand at 2568.286 kb on + strand at 2568.418 kb on - strand at 2568.535 kb on + strand at 2568.540 kb on + strand at 2568.540 kb on + strand at 2568.540 kb on + strand at 2568.619 kb on + strand at 2568.651 kb on + strand at 2568.651 kb on + strand at 2568.652 kb on + strand at 2568.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,565,352 + Dsui_2412 0.65 +0.6 2,565,408 + Dsui_2412 0.67 +0.2 2,565,424 + -2.1 2,565,523 + Dsui_2412 0.71 -0.2 2,565,597 + +0.0 2,565,639 + Dsui_2412 0.76 +0.7 2,565,670 + Dsui_2412 0.77 +0.5 2,565,685 + Dsui_2412 0.77 +0.4 2,565,686 - -1.1 2,565,793 + Dsui_2412 0.81 +0.6 2,565,815 + Dsui_2412 0.82 -0.2 2,565,913 + Dsui_2412 0.86 -0.2 2,565,913 + Dsui_2412 0.86 -0.4 2,565,990 - -1.8 2,566,170 + -0.8 2,566,232 + -0.0 2,566,326 - -0.4 2,566,355 + +0.6 2,566,436 + +0.4 2,566,530 + Dsui_2413 0.14 +0.8 2,566,558 + Dsui_2413 0.16 +0.4 2,566,576 - -2.1 2,566,591 - -2.1 2,566,669 + Dsui_2413 0.24 +0.1 2,566,908 + Dsui_2413 0.41 +0.6 2,567,153 + Dsui_2413 0.59 +1.1 2,567,200 + Dsui_2413 0.63 +0.8 2,567,355 + Dsui_2413 0.74 +1.3 2,567,419 + Dsui_2413 0.79 +2.6 2,567,420 + Dsui_2413 0.79 +0.2 2,567,716 + +0.8 2,567,811 + -2.0 2,567,957 + -2.0 2,567,965 + Dsui_2414 0.25 -0.3 2,567,965 + Dsui_2414 0.25 +0.2 2,567,984 - -1.4 2,567,984 - -0.9 2,568,015 + +1.2 2,568,159 - -1.0 2,568,219 + -2.1 2,568,229 + -2.8 2,568,286 + -3.0 2,568,418 - -2.5 2,568,535 + +1.3 2,568,540 + -0.8 2,568,540 + +0.8 2,568,540 + +0.4 2,568,619 + -0.2 2,568,651 + +1.5 2,568,651 + +1.7 2,568,652 + +0.2 2,568,680 + +1.1
Or see this region's nucleotide sequence