Strain Fitness in Dechlorosoma suillum PS around Dsui_2357

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2355 and Dsui_2356 are separated by 50 nucleotidesDsui_2356 and Dsui_2357 are separated by 76 nucleotidesDsui_2357 and Dsui_2358 are separated by 98 nucleotides Dsui_2355: Dsui_2355 - cytochrome B561, at 2,506,956 to 2,507,495 _2355 Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124 _2356 Dsui_2357: Dsui_2357 - hypothetical protein, at 2,508,201 to 2,508,767 _2357 Dsui_2358: Dsui_2358 - signal transduction histidine kinase, at 2,508,866 to 2,510,302 _2358 Position (kb) 2508 2509Strain fitness (log2 ratio) -3 -2 -1 0 1at 2507.282 kb on + strand, within Dsui_2355at 2507.282 kb on + strand, within Dsui_2355at 2507.318 kb on + strand, within Dsui_2355at 2507.349 kb on + strandat 2507.363 kb on + strand, within Dsui_2355at 2507.371 kb on - strandat 2507.489 kb on + strandat 2507.522 kb on + strandat 2507.528 kb on - strandat 2507.617 kb on + strandat 2507.861 kb on + strandat 2507.909 kb on + strandat 2508.118 kb on + strandat 2508.148 kb on + strandat 2508.159 kb on + strandat 2508.169 kb on + strandat 2508.292 kb on + strandat 2508.466 kb on - strandat 2508.595 kb on + strand, within Dsui_2357at 2508.837 kb on + strandat 2509.014 kb on + strand, within Dsui_2358at 2509.120 kb on + strand, within Dsui_2358at 2509.285 kb on - strandat 2509.314 kb on - strandat 2509.753 kb on + strand, within Dsui_2358

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,507,282 + Dsui_2355 0.60 -0.5
2,507,282 + Dsui_2355 0.60 +0.0
2,507,318 + Dsui_2355 0.67 -2.0
2,507,349 + +0.4
2,507,363 + Dsui_2355 0.75 -1.4
2,507,371 - -1.9
2,507,489 + -1.3
2,507,522 + +1.6
2,507,528 - -1.8
2,507,617 + -1.4
2,507,861 + -2.8
2,507,909 + -0.3
2,508,118 + -0.9
2,508,148 + +0.3
2,508,159 + -1.9
2,508,169 + -2.4
2,508,292 + +0.1
2,508,466 - -0.2
2,508,595 + Dsui_2357 0.69 +0.5
2,508,837 + +0.4
2,509,014 + Dsui_2358 0.10 +0.3
2,509,120 + Dsui_2358 0.18 +1.6
2,509,285 - -3.3
2,509,314 - -2.8
2,509,753 + Dsui_2358 0.62 +0.5

Or see this region's nucleotide sequence