Strain Fitness in Dechlorosoma suillum PS around Dsui_2251

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2250 and Dsui_2251 are separated by 92 nucleotidesDsui_2251 and Dsui_2252 are separated by 18 nucleotides Dsui_2250: Dsui_2250 - putative domain HDIG-containing protein, at 2,397,320 to 2,398,582 _2250 Dsui_2251: Dsui_2251 - signal transduction histidine kinase, at 2,398,675 to 2,400,147 _2251 Dsui_2252: Dsui_2252 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,400,166 to 2,401,707 _2252 Position (kb) 2398 2399 2400 2401Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2397.999 kb on + strand, within Dsui_2250at 2398.056 kb on - strandat 2398.157 kb on + strandat 2398.251 kb on + strand, within Dsui_2250at 2398.260 kb on - strandat 2398.342 kb on + strandat 2398.432 kb on - strandat 2398.469 kb on - strandat 2398.596 kb on + strandat 2398.610 kb on + strandat 2398.611 kb on + strandat 2398.713 kb on + strandat 2399.148 kb on + strandat 2399.258 kb on - strand, within Dsui_2251at 2399.297 kb on + strandat 2399.525 kb on - strand, within Dsui_2251at 2399.572 kb on - strandat 2399.612 kb on + strand, within Dsui_2251at 2399.618 kb on + strandat 2399.709 kb on + strand, within Dsui_2251at 2399.779 kb on - strandat 2399.808 kb on + strand, within Dsui_2251at 2399.876 kb on + strandat 2399.978 kb on + strand, within Dsui_2251at 2399.982 kb on - strand, within Dsui_2251at 2399.983 kb on - strand, within Dsui_2251at 2400.132 kb on - strandat 2400.137 kb on - strandat 2400.141 kb on + strandat 2400.149 kb on - strandat 2400.149 kb on - strandat 2400.283 kb on - strandat 2400.290 kb on + strandat 2400.507 kb on - strand, within Dsui_2252at 2400.587 kb on + strandat 2400.617 kb on - strand, within Dsui_2252at 2400.630 kb on + strandat 2400.687 kb on + strand, within Dsui_2252at 2400.812 kb on - strand, within Dsui_2252at 2400.947 kb on - strand, within Dsui_2252at 2401.025 kb on - strand, within Dsui_2252at 2401.100 kb on + strand, within Dsui_2252

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,397,999 + Dsui_2250 0.54 -0.6
2,398,056 - -2.8
2,398,157 + +0.2
2,398,251 + Dsui_2250 0.74 +2.2
2,398,260 - +0.4
2,398,342 + -0.6
2,398,432 - -3.2
2,398,469 - -2.4
2,398,596 + -0.8
2,398,610 + -0.3
2,398,611 + -0.4
2,398,713 + -1.1
2,399,148 + -0.8
2,399,258 - Dsui_2251 0.40 +0.2
2,399,297 + -0.4
2,399,525 - Dsui_2251 0.58 -2.0
2,399,572 - +1.2
2,399,612 + Dsui_2251 0.64 -2.2
2,399,618 + +0.8
2,399,709 + Dsui_2251 0.70 -1.8
2,399,779 - -1.8
2,399,808 + Dsui_2251 0.77 +0.0
2,399,876 + -1.9
2,399,978 + Dsui_2251 0.88 -2.1
2,399,982 - Dsui_2251 0.89 -2.3
2,399,983 - Dsui_2251 0.89 -1.4
2,400,132 - -2.8
2,400,137 - +0.8
2,400,141 + +0.2
2,400,149 - -0.8
2,400,149 - -1.2
2,400,283 - +1.1
2,400,290 + -0.6
2,400,507 - Dsui_2252 0.22 +1.3
2,400,587 + -2.4
2,400,617 - Dsui_2252 0.29 +0.8
2,400,630 + -1.2
2,400,687 + Dsui_2252 0.34 +0.3
2,400,812 - Dsui_2252 0.42 +1.2
2,400,947 - Dsui_2252 0.51 -0.9
2,401,025 - Dsui_2252 0.56 +1.4
2,401,100 + Dsui_2252 0.61 +0.9

Or see this region's nucleotide sequence