Strain Fitness in Dechlorosoma suillum PS around Dsui_2229

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2228 and Dsui_2229 are separated by 70 nucleotidesDsui_2229 and Dsui_2230 are separated by 95 nucleotides Dsui_2228: Dsui_2228 - Zn-dependent alcohol dehydrogenase, at 2,368,812 to 2,369,834 _2228 Dsui_2229: Dsui_2229 - transcriptional regulator, at 2,369,905 to 2,370,780 _2229 Dsui_2230: Dsui_2230 - conserved hypothetical integral membrane protein, at 2,370,876 to 2,371,910 _2230 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2368.975 kb on - strand, within Dsui_2228at 2368.992 kb on - strandat 2369.084 kb on - strandat 2369.142 kb on - strandat 2369.142 kb on - strandat 2369.222 kb on + strandat 2369.260 kb on + strandat 2369.299 kb on - strand, within Dsui_2228at 2369.356 kb on + strandat 2369.356 kb on - strand, within Dsui_2228at 2369.356 kb on - strand, within Dsui_2228at 2369.356 kb on - strand, within Dsui_2228at 2369.357 kb on + strand, within Dsui_2228at 2369.358 kb on + strandat 2369.358 kb on + strandat 2369.366 kb on - strand, within Dsui_2228at 2369.374 kb on - strandat 2369.413 kb on + strandat 2369.416 kb on + strandat 2369.477 kb on + strandat 2369.485 kb on - strandat 2369.524 kb on + strandat 2369.606 kb on - strandat 2369.636 kb on + strandat 2369.668 kb on - strandat 2369.736 kb on - strandat 2369.736 kb on - strandat 2369.738 kb on + strandat 2369.738 kb on + strandat 2370.078 kb on + strandat 2370.078 kb on + strandat 2370.110 kb on + strandat 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.163 kb on - strand, within Dsui_2229at 2370.168 kb on - strand, within Dsui_2229at 2370.284 kb on - strand, within Dsui_2229at 2370.292 kb on - strandat 2370.396 kb on - strand, within Dsui_2229at 2370.401 kb on - strand, within Dsui_2229at 2370.484 kb on + strandat 2370.510 kb on - strand, within Dsui_2229at 2370.515 kb on - strand, within Dsui_2229at 2370.625 kb on - strand, within Dsui_2229at 2370.642 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.691 kb on + strandat 2371.072 kb on + strand, within Dsui_2230at 2371.085 kb on - strandat 2371.214 kb on - strandat 2371.247 kb on - strandat 2371.247 kb on - strandat 2371.468 kb on + strandat 2371.527 kb on - strandat 2371.672 kb on - strandat 2371.680 kb on + strandat 2371.759 kb on - strand, within Dsui_2230at 2371.769 kb on - strand, within Dsui_2230

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,368,975 - Dsui_2228 0.16 -1.9
2,368,992 - -0.4
2,369,084 - -2.6
2,369,142 - +1.0
2,369,142 - -2.1
2,369,222 + -0.7
2,369,260 + +1.0
2,369,299 - Dsui_2228 0.48 -0.6
2,369,356 + -1.3
2,369,356 - Dsui_2228 0.53 -3.5
2,369,356 - Dsui_2228 0.53 -0.8
2,369,356 - Dsui_2228 0.53 -3.2
2,369,357 + Dsui_2228 0.53 -1.3
2,369,358 + -0.1
2,369,358 + +0.6
2,369,366 - Dsui_2228 0.54 -0.7
2,369,374 - +1.5
2,369,413 + +1.2
2,369,416 + -1.5
2,369,477 + -3.0
2,369,485 - -2.4
2,369,524 + -1.3
2,369,606 - -0.1
2,369,636 + -1.1
2,369,668 - -2.9
2,369,736 - -1.9
2,369,736 - +0.3
2,369,738 + +0.5
2,369,738 + -2.3
2,370,078 + -3.4
2,370,078 + +1.3
2,370,110 + +1.1
2,370,118 - Dsui_2229 0.24 +0.4
2,370,118 - Dsui_2229 0.24 +1.2
2,370,118 - Dsui_2229 0.24 +0.8
2,370,163 - Dsui_2229 0.29 +2.4
2,370,168 - Dsui_2229 0.30 +0.9
2,370,284 - Dsui_2229 0.43 +0.7
2,370,292 - +0.3
2,370,396 - Dsui_2229 0.56 +1.1
2,370,401 - Dsui_2229 0.57 +0.8
2,370,484 + -1.3
2,370,510 - Dsui_2229 0.69 +0.5
2,370,515 - Dsui_2229 0.70 +0.9
2,370,625 - Dsui_2229 0.82 +0.9
2,370,642 - Dsui_2229 0.84 +1.5
2,370,672 - Dsui_2229 0.88 +0.4
2,370,672 - Dsui_2229 0.88 +2.3
2,370,691 + -0.8
2,371,072 + Dsui_2230 0.19 +0.7
2,371,085 - -1.0
2,371,214 - -1.9
2,371,247 - -3.0
2,371,247 - -1.7
2,371,468 + -3.3
2,371,527 - -2.1
2,371,672 - -1.3
2,371,680 + -1.1
2,371,759 - Dsui_2230 0.85 +0.4
2,371,769 - Dsui_2230 0.86 -1.6

Or see this region's nucleotide sequence