Strain Fitness in Dechlorosoma suillum PS around Dsui_1988

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1986 and Dsui_1987 are separated by 24 nucleotidesDsui_1987 and Dsui_1988 are separated by 105 nucleotidesDsui_1988 and Dsui_1989 are separated by 135 nucleotidesDsui_1989 and Dsui_1990 are separated by 73 nucleotidesDsui_1990 and Dsui_1991 overlap by 35 nucleotides Dsui_1986: Dsui_1986 - sulfite reductase, beta subunit (hemoprotein), at 2,094,974 to 2,096,650 _1986 Dsui_1987: Dsui_1987 - putative permease, at 2,096,675 to 2,097,448 _1987 Dsui_1988: Dsui_1988 - transcriptional regulator, at 2,097,554 to 2,098,528 _1988 Dsui_1989: Dsui_1989 - ribosomal protein S6, at 2,098,664 to 2,099,047 _1989 Dsui_1990: Dsui_1990 - primosomal replication protein N, at 2,099,121 to 2,099,411 _1990 Dsui_1991: Dsui_1991 - ribosomal protein S18, at 2,099,377 to 2,099,655 _1991 Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2096.707 kb on - strandat 2096.785 kb on + strandat 2096.785 kb on + strandat 2096.871 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.925 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2096.997 kb on - strand, within Dsui_1987at 2097.003 kb on - strand, within Dsui_1987at 2097.063 kb on + strandat 2097.063 kb on + strandat 2097.069 kb on - strand, within Dsui_1987at 2097.071 kb on - strand, within Dsui_1987at 2097.191 kb on - strand, within Dsui_1987at 2097.192 kb on - strand, within Dsui_1987at 2097.276 kb on - strand, within Dsui_1987at 2097.308 kb on - strand, within Dsui_1987at 2097.325 kb on - strand, within Dsui_1987at 2097.441 kb on - strandat 2098.522 kb on + strandat 2098.522 kb on + strandat 2098.522 kb on + strandat 2098.522 kb on + strandat 2098.522 kb on + strandat 2098.530 kb on - strandat 2098.530 kb on - strandat 2098.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,096,707 - +1.4
2,096,785 + +3.3
2,096,785 + +0.9
2,096,871 - Dsui_1987 0.25 +0.9
2,096,925 - Dsui_1987 0.32 +1.1
2,096,925 - Dsui_1987 0.32 +1.2
2,096,997 - Dsui_1987 0.42 +1.6
2,096,997 - Dsui_1987 0.42 +0.8
2,097,003 - Dsui_1987 0.42 +1.0
2,097,063 + -1.2
2,097,063 + -1.5
2,097,069 - Dsui_1987 0.51 +0.3
2,097,071 - Dsui_1987 0.51 +0.9
2,097,191 - Dsui_1987 0.67 +0.4
2,097,192 - Dsui_1987 0.67 +1.5
2,097,276 - Dsui_1987 0.78 +1.2
2,097,308 - Dsui_1987 0.82 +1.4
2,097,325 - Dsui_1987 0.84 +0.6
2,097,441 - +2.8
2,098,522 + -0.1
2,098,522 + +0.5
2,098,522 + +0.7
2,098,522 + +1.2
2,098,522 + +0.2
2,098,530 - -0.4
2,098,530 - -2.2
2,098,530 - -0.7

Or see this region's nucleotide sequence