Strain Fitness in Dechlorosoma suillum PS around Dsui_1891

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1890 and Dsui_1891 are separated by 144 nucleotidesDsui_1891 and Dsui_1892 are separated by 159 nucleotides Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605 _1890 Dsui_1891: Dsui_1891 - enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase, at 1,991,750 to 1,992,919 _1891 Dsui_1892: Dsui_1892 - transcriptional regulator, at 1,993,079 to 1,993,966 _1892 Position (kb) 1991 1992 1993Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1990.852 kb on + strand, within Dsui_1890at 1990.894 kb on + strand, within Dsui_1890at 1990.904 kb on + strand, within Dsui_1890at 1990.922 kb on - strand, within Dsui_1890at 1990.972 kb on + strand, within Dsui_1890at 1990.995 kb on + strandat 1991.108 kb on + strandat 1991.116 kb on - strand, within Dsui_1890at 1991.394 kb on - strandat 1991.409 kb on - strandat 1991.575 kb on - strandat 1991.670 kb on - strandat 1991.699 kb on - strandat 1991.901 kb on - strandat 1991.977 kb on + strandat 1992.045 kb on + strand, within Dsui_1891at 1992.097 kb on + strand, within Dsui_1891at 1992.102 kb on + strand, within Dsui_1891at 1992.193 kb on - strand, within Dsui_1891at 1992.193 kb on - strandat 1992.246 kb on - strandat 1992.345 kb on - strandat 1992.408 kb on + strandat 1992.546 kb on + strand, within Dsui_1891at 1992.567 kb on - strand, within Dsui_1891at 1992.570 kb on + strand, within Dsui_1891at 1992.578 kb on - strand, within Dsui_1891at 1992.743 kb on + strandat 1992.779 kb on + strandat 1992.837 kb on - strandat 1992.950 kb on + strandat 1992.994 kb on + strandat 1992.999 kb on + strandat 1993.000 kb on - strandat 1993.134 kb on - strandat 1993.492 kb on - strandat 1993.497 kb on + strand, within Dsui_1892at 1993.497 kb on + strand, within Dsui_1892at 1993.616 kb on + strand, within Dsui_1892at 1993.617 kb on + strand, within Dsui_1892at 1993.617 kb on + strand, within Dsui_1892at 1993.697 kb on + strand, within Dsui_1892at 1993.705 kb on - strand, within Dsui_1892at 1993.770 kb on - strand, within Dsui_1892at 1993.837 kb on + strand, within Dsui_1892at 1993.879 kb on + strandat 1993.880 kb on - strandat 1993.887 kb on - strandat 1993.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,990,852 + Dsui_1890 0.70 -0.7
1,990,894 + Dsui_1890 0.72 -0.3
1,990,904 + Dsui_1890 0.72 -0.1
1,990,922 - Dsui_1890 0.73 +1.4
1,990,972 + Dsui_1890 0.75 +0.9
1,990,995 + +3.3
1,991,108 + -2.0
1,991,116 - Dsui_1890 0.81 -0.1
1,991,394 - +1.1
1,991,409 - -0.4
1,991,575 - -0.1
1,991,670 - +1.1
1,991,699 - -2.3
1,991,901 - +0.5
1,991,977 + +0.3
1,992,045 + Dsui_1891 0.25 -1.3
1,992,097 + Dsui_1891 0.30 -2.4
1,992,102 + Dsui_1891 0.30 +0.1
1,992,193 - Dsui_1891 0.38 -2.0
1,992,193 - -3.8
1,992,246 - -2.0
1,992,345 - -0.0
1,992,408 + +4.3
1,992,546 + Dsui_1891 0.68 +0.9
1,992,567 - Dsui_1891 0.70 -1.2
1,992,570 + Dsui_1891 0.70 -2.4
1,992,578 - Dsui_1891 0.71 -1.2
1,992,743 + +0.6
1,992,779 + +0.2
1,992,837 - -0.2
1,992,950 + -2.0
1,992,994 + -2.5
1,992,999 + -1.3
1,993,000 - -1.7
1,993,134 - -0.3
1,993,492 - +2.3
1,993,497 + Dsui_1892 0.47 +0.1
1,993,497 + Dsui_1892 0.47 +0.5
1,993,616 + Dsui_1892 0.60 +1.0
1,993,617 + Dsui_1892 0.61 +1.0
1,993,617 + Dsui_1892 0.61 +1.3
1,993,697 + Dsui_1892 0.70 +0.5
1,993,705 - Dsui_1892 0.70 -1.2
1,993,770 - Dsui_1892 0.78 +0.3
1,993,837 + Dsui_1892 0.85 +0.9
1,993,879 + +0.7
1,993,880 - -0.4
1,993,887 - +0.6
1,993,887 - -2.6

Or see this region's nucleotide sequence