Strain Fitness in Dechlorosoma suillum PS around Dsui_1797

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1796 and Dsui_1797 are separated by 77 nucleotidesDsui_1797 and Dsui_1798 are separated by 29 nucleotides Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614 _1796 Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264 _1797 Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028 _1798 Position (kb) 1896 1897 1898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1895.695 kb on - strandat 1895.754 kb on + strand, within Dsui_1796at 1895.762 kb on - strand, within Dsui_1796at 1895.787 kb on - strandat 1895.812 kb on - strand, within Dsui_1796at 1895.875 kb on + strandat 1895.897 kb on - strand, within Dsui_1796at 1895.905 kb on + strand, within Dsui_1796at 1895.914 kb on - strand, within Dsui_1796at 1895.914 kb on - strand, within Dsui_1796at 1895.922 kb on + strandat 1895.922 kb on + strand, within Dsui_1796at 1895.935 kb on + strand, within Dsui_1796at 1896.022 kb on - strand, within Dsui_1796at 1896.037 kb on - strand, within Dsui_1796at 1896.046 kb on + strand, within Dsui_1796at 1896.056 kb on + strandat 1896.056 kb on + strand, within Dsui_1796at 1896.056 kb on + strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.086 kb on - strand, within Dsui_1796at 1896.099 kb on - strand, within Dsui_1796at 1896.132 kb on - strand, within Dsui_1796at 1896.147 kb on + strand, within Dsui_1796at 1896.147 kb on + strand, within Dsui_1796at 1896.155 kb on - strand, within Dsui_1796at 1896.162 kb on - strand, within Dsui_1796at 1896.164 kb on + strand, within Dsui_1796at 1896.169 kb on + strand, within Dsui_1796at 1896.169 kb on + strand, within Dsui_1796at 1896.177 kb on - strand, within Dsui_1796at 1896.238 kb on + strand, within Dsui_1796at 1896.261 kb on + strand, within Dsui_1796at 1896.262 kb on + strandat 1896.281 kb on + strand, within Dsui_1796at 1896.336 kb on - strand, within Dsui_1796at 1896.404 kb on + strand, within Dsui_1796at 1896.422 kb on - strand, within Dsui_1796at 1896.423 kb on + strandat 1896.484 kb on - strandat 1896.484 kb on - strand, within Dsui_1796at 1896.587 kb on - strandat 1896.594 kb on + strandat 1896.600 kb on - strandat 1896.657 kb on - strandat 1896.669 kb on + strandat 1896.714 kb on - strandat 1896.722 kb on + strandat 1896.736 kb on - strandat 1896.774 kb on - strand, within Dsui_1797at 1896.801 kb on + strandat 1896.825 kb on - strandat 1896.834 kb on + strandat 1896.842 kb on - strand, within Dsui_1797at 1896.898 kb on + strand, within Dsui_1797at 1896.906 kb on - strand, within Dsui_1797at 1896.937 kb on + strandat 1896.947 kb on - strand, within Dsui_1797at 1896.948 kb on + strand, within Dsui_1797at 1896.983 kb on - strand, within Dsui_1797at 1897.014 kb on - strand, within Dsui_1797at 1897.042 kb on + strandat 1897.050 kb on - strand, within Dsui_1797at 1897.099 kb on - strand, within Dsui_1797at 1897.136 kb on - strand, within Dsui_1797at 1897.233 kb on + strandat 1897.241 kb on - strandat 1897.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,895,695 - -2.7
1,895,754 + Dsui_1796 0.11 -1.8
1,895,762 - Dsui_1796 0.12 -0.8
1,895,787 - +0.4
1,895,812 - Dsui_1796 0.17 +0.2
1,895,875 + -2.8
1,895,897 - Dsui_1796 0.26 -1.9
1,895,905 + Dsui_1796 0.27 -2.3
1,895,914 - Dsui_1796 0.28 -4.0
1,895,914 - Dsui_1796 0.28 -3.6
1,895,922 + -1.8
1,895,922 + Dsui_1796 0.28 -2.7
1,895,935 + Dsui_1796 0.30 -2.4
1,896,022 - Dsui_1796 0.39 +0.2
1,896,037 - Dsui_1796 0.40 -2.6
1,896,046 + Dsui_1796 0.41 -3.1
1,896,056 + -2.8
1,896,056 + Dsui_1796 0.42 -3.1
1,896,056 + Dsui_1796 0.42 -2.8
1,896,064 - Dsui_1796 0.43 -2.6
1,896,064 - Dsui_1796 0.43 -2.3
1,896,064 - Dsui_1796 0.43 -1.2
1,896,064 - Dsui_1796 0.43 -0.0
1,896,064 - Dsui_1796 0.43 -1.1
1,896,086 - Dsui_1796 0.45 -3.5
1,896,099 - Dsui_1796 0.47 +0.0
1,896,132 - Dsui_1796 0.50 -0.4
1,896,147 + Dsui_1796 0.52 -0.8
1,896,147 + Dsui_1796 0.52 +0.2
1,896,155 - Dsui_1796 0.53 -1.3
1,896,162 - Dsui_1796 0.53 +2.8
1,896,164 + Dsui_1796 0.53 -2.3
1,896,169 + Dsui_1796 0.54 -2.8
1,896,169 + Dsui_1796 0.54 -2.5
1,896,177 - Dsui_1796 0.55 -0.1
1,896,238 + Dsui_1796 0.61 -1.0
1,896,261 + Dsui_1796 0.63 -2.5
1,896,262 + +2.2
1,896,281 + Dsui_1796 0.66 -2.3
1,896,336 - Dsui_1796 0.71 -2.8
1,896,404 + Dsui_1796 0.78 +0.0
1,896,422 - Dsui_1796 0.80 -3.0
1,896,423 + -0.8
1,896,484 - -2.7
1,896,484 - Dsui_1796 0.86 +0.9
1,896,587 - +1.0
1,896,594 + -0.8
1,896,600 - -2.8
1,896,657 - -3.4
1,896,669 + +0.1
1,896,714 - +0.4
1,896,722 + -0.6
1,896,736 - -0.6
1,896,774 - Dsui_1797 0.14 -3.4
1,896,801 + -2.3
1,896,825 - -1.6
1,896,834 + -1.6
1,896,842 - Dsui_1797 0.26 -1.5
1,896,898 + Dsui_1797 0.36 +0.2
1,896,906 - Dsui_1797 0.37 -1.9
1,896,937 + -1.6
1,896,947 - Dsui_1797 0.45 -1.0
1,896,948 + Dsui_1797 0.45 -0.6
1,896,983 - Dsui_1797 0.51 -1.0
1,897,014 - Dsui_1797 0.56 -3.6
1,897,042 + -2.2
1,897,050 - Dsui_1797 0.62 -3.3
1,897,099 - Dsui_1797 0.71 -4.3
1,897,136 - Dsui_1797 0.77 +0.2
1,897,233 + +0.8
1,897,241 - -0.1
1,897,266 - -0.3

Or see this region's nucleotide sequence