Strain Fitness in Dechlorosoma suillum PS around Dsui_1727

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1725 and Dsui_1726 are separated by 12 nucleotidesDsui_1726 and Dsui_1727 overlap by 8 nucleotidesDsui_1727 and Dsui_1728 are separated by 4 nucleotidesDsui_1728 and Dsui_1729 are separated by 75 nucleotides Dsui_1725: Dsui_1725 - ATPase involved in chromosome partitioning, at 1,816,853 to 1,817,755 _1725 Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508 _1726 Dsui_1727: Dsui_1727 - flagellar motor component, at 1,818,501 to 1,819,241 _1727 Dsui_1728: Dsui_1728 - flagellar motor protein, at 1,819,246 to 1,820,097 _1728 Dsui_1729: Dsui_1729 - flagellar biosynthesis/type III secretory pathway chaperone, at 1,820,173 to 1,820,640 _1729 Position (kb) 1818 1819 1820Strain fitness (log2 ratio) -2 -1 0 1 2at 1817.517 kb on + strand, within Dsui_1725at 1817.540 kb on + strand, within Dsui_1725at 1817.548 kb on - strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.749 kb on - strandat 1817.750 kb on + strandat 1817.891 kb on + strand, within Dsui_1726at 1817.914 kb on + strand, within Dsui_1726at 1817.918 kb on - strand, within Dsui_1726at 1817.956 kb on + strand, within Dsui_1726at 1818.032 kb on + strand, within Dsui_1726at 1818.059 kb on + strand, within Dsui_1726at 1818.125 kb on + strand, within Dsui_1726at 1818.133 kb on - strand, within Dsui_1726at 1818.133 kb on - strand, within Dsui_1726at 1818.178 kb on - strand, within Dsui_1726at 1818.233 kb on - strand, within Dsui_1726at 1818.312 kb on + strand, within Dsui_1726at 1818.357 kb on + strand, within Dsui_1726at 1818.365 kb on - strand, within Dsui_1726at 1818.447 kb on - strandat 1818.448 kb on - strandat 1818.609 kb on - strand, within Dsui_1727at 1818.628 kb on - strand, within Dsui_1727at 1818.660 kb on - strandat 1818.703 kb on - strand, within Dsui_1727at 1818.722 kb on + strand, within Dsui_1727at 1818.831 kb on + strand, within Dsui_1727at 1818.879 kb on + strand, within Dsui_1727at 1818.880 kb on + strand, within Dsui_1727at 1818.991 kb on - strand, within Dsui_1727at 1818.998 kb on - strand, within Dsui_1727at 1819.220 kb on + strandat 1819.378 kb on + strand, within Dsui_1728at 1819.383 kb on + strand, within Dsui_1728at 1819.502 kb on - strand, within Dsui_1728at 1819.610 kb on + strand, within Dsui_1728at 1819.613 kb on - strand, within Dsui_1728at 1819.620 kb on + strand, within Dsui_1728at 1819.678 kb on + strand, within Dsui_1728at 1819.686 kb on - strand, within Dsui_1728at 1819.761 kb on - strand, within Dsui_1728at 1819.814 kb on + strand, within Dsui_1728at 1819.839 kb on - strand, within Dsui_1728at 1819.841 kb on + strand, within Dsui_1728at 1819.846 kb on + strand, within Dsui_1728at 1819.959 kb on - strand, within Dsui_1728at 1820.103 kb on + strandat 1820.110 kb on - strandat 1820.186 kb on + strandat 1820.235 kb on - strand, within Dsui_1729at 1820.239 kb on + strand, within Dsui_1729

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,817,517 + Dsui_1725 0.74 +1.0
1,817,540 + Dsui_1725 0.76 +1.1
1,817,548 - Dsui_1725 0.77 +0.0
1,817,655 + Dsui_1725 0.89 +1.3
1,817,655 + Dsui_1725 0.89 +1.8
1,817,749 - -0.5
1,817,750 + +1.8
1,817,891 + Dsui_1726 0.17 +1.1
1,817,914 + Dsui_1726 0.20 +1.1
1,817,918 - Dsui_1726 0.20 -0.5
1,817,956 + Dsui_1726 0.25 +1.8
1,818,032 + Dsui_1726 0.36 +1.0
1,818,059 + Dsui_1726 0.39 +1.3
1,818,125 + Dsui_1726 0.48 +1.7
1,818,133 - Dsui_1726 0.49 -0.9
1,818,133 - Dsui_1726 0.49 +0.8
1,818,178 - Dsui_1726 0.55 +0.0
1,818,233 - Dsui_1726 0.63 -0.5
1,818,312 + Dsui_1726 0.73 +0.8
1,818,357 + Dsui_1726 0.79 +1.2
1,818,365 - Dsui_1726 0.81 +0.1
1,818,447 - +0.5
1,818,448 - -0.5
1,818,609 - Dsui_1727 0.15 +0.5
1,818,628 - Dsui_1727 0.17 -0.5
1,818,660 - -2.5
1,818,703 - Dsui_1727 0.27 +0.5
1,818,722 + Dsui_1727 0.30 +1.2
1,818,831 + Dsui_1727 0.45 +0.8
1,818,879 + Dsui_1727 0.51 +1.5
1,818,880 + Dsui_1727 0.51 -0.2
1,818,991 - Dsui_1727 0.66 +0.8
1,818,998 - Dsui_1727 0.67 +1.2
1,819,220 + +0.9
1,819,378 + Dsui_1728 0.15 +1.4
1,819,383 + Dsui_1728 0.16 +0.9
1,819,502 - Dsui_1728 0.30 -0.5
1,819,610 + Dsui_1728 0.43 +1.5
1,819,613 - Dsui_1728 0.43 +1.4
1,819,620 + Dsui_1728 0.44 +1.4
1,819,678 + Dsui_1728 0.51 +0.6
1,819,686 - Dsui_1728 0.52 +0.9
1,819,761 - Dsui_1728 0.60 +0.3
1,819,814 + Dsui_1728 0.67 +1.0
1,819,839 - Dsui_1728 0.70 +0.1
1,819,841 + Dsui_1728 0.70 +1.4
1,819,846 + Dsui_1728 0.70 +0.9
1,819,959 - Dsui_1728 0.84 +1.2
1,820,103 + +1.3
1,820,110 - +0.8
1,820,186 + -0.4
1,820,235 - Dsui_1729 0.13 +1.1
1,820,239 + Dsui_1729 0.14 +0.3

Or see this region's nucleotide sequence