Strain Fitness in Dechlorosoma suillum PS around Dsui_1527

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1525 and Dsui_1526 are separated by 73 nucleotidesDsui_1526 and Dsui_1527 are separated by 635 nucleotidesDsui_1527 and Dsui_1528 are separated by 165 nucleotides Dsui_1525: Dsui_1525 - sulfate/thiosulfate-binding protein, at 1,587,583 to 1,588,590 _1525 Dsui_1526: Dsui_1526 - hypothetical protein, at 1,588,664 to 1,588,861 _1526 Dsui_1527: Dsui_1527 - hypothetical protein, at 1,589,497 to 1,589,706 _1527 Dsui_1528: Dsui_1528 - signal transduction histidine kinase, at 1,589,872 to 1,591,311 _1528 Position (kb) 1589 1590Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1588.507 kb on - strandat 1588.519 kb on + strandat 1588.519 kb on + strandat 1588.536 kb on - strandat 1588.571 kb on - strandat 1588.572 kb on + strandat 1588.572 kb on + strandat 1588.655 kb on + strandat 1588.726 kb on + strand, within Dsui_1526at 1588.726 kb on + strandat 1588.734 kb on - strand, within Dsui_1526at 1588.754 kb on + strand, within Dsui_1526at 1588.782 kb on - strand, within Dsui_1526at 1588.803 kb on - strand, within Dsui_1526at 1588.803 kb on - strand, within Dsui_1526at 1588.831 kb on + strand, within Dsui_1526at 1588.870 kb on + strandat 1588.892 kb on - strandat 1588.922 kb on - strandat 1588.922 kb on - strandat 1589.161 kb on - strandat 1589.163 kb on + strandat 1589.164 kb on - strandat 1589.203 kb on + strandat 1589.218 kb on - strandat 1589.275 kb on - strandat 1589.877 kb on - strandat 1589.878 kb on + strandat 1589.879 kb on + strandat 1589.879 kb on + strandat 1589.947 kb on - strandat 1589.954 kb on - strandat 1590.111 kb on + strand, within Dsui_1528at 1590.184 kb on - strand, within Dsui_1528at 1590.234 kb on + strand, within Dsui_1528at 1590.329 kb on - strand, within Dsui_1528at 1590.382 kb on + strand, within Dsui_1528at 1590.400 kb on - strand, within Dsui_1528at 1590.506 kb on - strand, within Dsui_1528at 1590.506 kb on - strand, within Dsui_1528at 1590.533 kb on + strand, within Dsui_1528

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,588,507 - -3.7
1,588,519 + -1.6
1,588,519 + -1.6
1,588,536 - -1.1
1,588,571 - -2.8
1,588,572 + +0.3
1,588,572 + +1.5
1,588,655 + +0.5
1,588,726 + Dsui_1526 0.31 -0.7
1,588,726 + -1.0
1,588,734 - Dsui_1526 0.35 -1.3
1,588,754 + Dsui_1526 0.45 -0.8
1,588,782 - Dsui_1526 0.60 -1.1
1,588,803 - Dsui_1526 0.70 +0.9
1,588,803 - Dsui_1526 0.70 +0.8
1,588,831 + Dsui_1526 0.84 +0.5
1,588,870 + +0.4
1,588,892 - +1.4
1,588,922 - +0.7
1,588,922 - +1.0
1,589,161 - -0.1
1,589,163 + +0.7
1,589,164 - +1.8
1,589,203 + +0.3
1,589,218 - +1.4
1,589,275 - +0.7
1,589,877 - +0.8
1,589,878 + -0.5
1,589,879 + +0.2
1,589,879 + -0.6
1,589,947 - +0.3
1,589,954 - -0.5
1,590,111 + Dsui_1528 0.17 -2.8
1,590,184 - Dsui_1528 0.22 -2.1
1,590,234 + Dsui_1528 0.25 -1.5
1,590,329 - Dsui_1528 0.32 +0.4
1,590,382 + Dsui_1528 0.35 -1.8
1,590,400 - Dsui_1528 0.37 -0.9
1,590,506 - Dsui_1528 0.44 -2.0
1,590,506 - Dsui_1528 0.44 -0.1
1,590,533 + Dsui_1528 0.46 -1.8

Or see this region's nucleotide sequence