Strain Fitness in Dechlorosoma suillum PS around Dsui_1418

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1416 and Dsui_1417 are separated by 48 nucleotidesDsui_1417 and Dsui_1418 overlap by 1 nucleotidesDsui_1418 and Dsui_1419 are separated by 7 nucleotidesDsui_1419 and Dsui_1420 overlap by 4 nucleotidesDsui_1420 and Dsui_1421 are separated by 39 nucleotides Dsui_1416: Dsui_1416 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,472,448 to 1,473,086 _1416 Dsui_1417: Dsui_1417 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 1,473,135 to 1,473,875 _1417 Dsui_1418: Dsui_1418 - imidazoleglycerol phosphate synthase, cyclase subunit, at 1,473,875 to 1,474,636 _1418 Dsui_1419: Dsui_1419 - phosphoribosyl-AMP cyclohydrolase, at 1,474,644 to 1,475,051 _1419 Dsui_1420: Dsui_1420 - phosphoribosyl-ATP pyrophosphohydrolase, at 1,475,048 to 1,475,371 _1420 Dsui_1421: Dsui_1421 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 1,475,411 to 1,475,770 _1421 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1475.406 kb on - strandat 1475.416 kb on - strandat 1475.416 kb on - strandat 1475.463 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.473 kb on - strand, within Dsui_1421at 1475.473 kb on - strand, within Dsui_1421at 1475.630 kb on + strand, within Dsui_1421

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,475,406 - -5.8
1,475,416 - -2.1
1,475,416 - -3.2
1,475,463 + Dsui_1421 0.14 +0.4
1,475,465 + Dsui_1421 0.15 +1.1
1,475,465 + Dsui_1421 0.15 -0.3
1,475,465 + Dsui_1421 0.15 +0.3
1,475,465 + Dsui_1421 0.15 -0.1
1,475,473 - Dsui_1421 0.17 -4.3
1,475,473 - Dsui_1421 0.17 -1.9
1,475,630 + Dsui_1421 0.61 -0.4

Or see this region's nucleotide sequence