Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1394 and Dsui_1395 are separated by 279 nucleotides Dsui_1395 and Dsui_1396 are separated by 154 nucleotides
Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534
_1394
Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718
_1395
Dsui_1396: Dsui_1396 - type II secretory pathway, component ExeA (predicted ATPase), at 1,455,873 to 1,457,318
_1396
Position (kb)
1453
1454
1455
1456 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1452.830 kb on - strand, within Dsui_1394 at 1452.892 kb on - strand, within Dsui_1394 at 1453.053 kb on - strand at 1453.103 kb on - strand, within Dsui_1394 at 1453.431 kb on - strand, within Dsui_1394 at 1453.468 kb on - strand at 1453.789 kb on - strand at 1453.791 kb on + strand at 1454.147 kb on + strand, within Dsui_1395 at 1454.148 kb on + strand, within Dsui_1395 at 1454.205 kb on + strand at 1454.206 kb on + strand at 1454.253 kb on + strand, within Dsui_1395 at 1454.282 kb on + strand at 1454.352 kb on + strand at 1454.402 kb on + strand, within Dsui_1395 at 1454.456 kb on - strand, within Dsui_1395 at 1454.467 kb on + strand at 1454.467 kb on - strand, within Dsui_1395 at 1454.720 kb on + strand, within Dsui_1395 at 1455.003 kb on + strand, within Dsui_1395 at 1455.255 kb on - strand, within Dsui_1395 at 1455.255 kb on - strand, within Dsui_1395 at 1455.292 kb on - strand, within Dsui_1395 at 1455.297 kb on - strand, within Dsui_1395 at 1455.354 kb on + strand, within Dsui_1395 at 1455.460 kb on - strand, within Dsui_1395 at 1455.503 kb on - strand, within Dsui_1395 at 1455.622 kb on + strand at 1455.622 kb on + strand at 1455.630 kb on - strand at 1455.630 kb on - strand at 1455.701 kb on + strand at 1455.706 kb on + strand at 1455.727 kb on + strand at 1455.733 kb on - strand at 1455.772 kb on + strand at 1455.898 kb on + strand at 1455.898 kb on + strand at 1456.079 kb on - strand, within Dsui_1396 at 1456.160 kb on - strand, within Dsui_1396 at 1456.261 kb on - strand, within Dsui_1396 at 1456.670 kb on + strand, within Dsui_1396
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 1,452,830 - Dsui_1394 0.28 -0.1 1,452,892 - Dsui_1394 0.34 +1.0 1,453,053 - -0.5 1,453,103 - Dsui_1394 0.56 +1.5 1,453,431 - Dsui_1394 0.89 +0.8 1,453,468 - +1.0 1,453,789 - +0.5 1,453,791 + -1.2 1,454,147 + Dsui_1395 0.17 +1.1 1,454,148 + Dsui_1395 0.18 +1.2 1,454,205 + -1.0 1,454,206 + -2.1 1,454,253 + Dsui_1395 0.23 -0.3 1,454,282 + +1.2 1,454,352 + -0.3 1,454,402 + Dsui_1395 0.31 -1.1 1,454,456 - Dsui_1395 0.34 -2.1 1,454,467 + -2.1 1,454,467 - Dsui_1395 0.34 +0.2 1,454,720 + Dsui_1395 0.48 +0.6 1,455,003 + Dsui_1395 0.62 -2.9 1,455,255 - Dsui_1395 0.76 -0.1 1,455,255 - Dsui_1395 0.76 +1.1 1,455,292 - Dsui_1395 0.78 +0.5 1,455,297 - Dsui_1395 0.78 +1.0 1,455,354 + Dsui_1395 0.81 +0.8 1,455,460 - Dsui_1395 0.86 +0.1 1,455,503 - Dsui_1395 0.89 +0.2 1,455,622 + -1.1 1,455,622 + +0.9 1,455,630 - +1.2 1,455,630 - -0.1 1,455,701 + -1.7 1,455,706 + -0.4 1,455,727 + +0.6 1,455,733 - +1.0 1,455,772 + -1.1 1,455,898 + +0.7 1,455,898 + -2.4 1,456,079 - Dsui_1396 0.14 +0.8 1,456,160 - Dsui_1396 0.20 +1.1 1,456,261 - Dsui_1396 0.27 +0.6 1,456,670 + Dsui_1396 0.55 -0.9
Or see this region's nucleotide sequence