Strain Fitness in Dechlorosoma suillum PS around Dsui_1300

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1298 and Dsui_1299 are separated by 69 nucleotidesDsui_1299 and Dsui_1300 are separated by 12 nucleotidesDsui_1300 and Dsui_1301 are separated by 46 nucleotidesDsui_1301 and Dsui_1302 overlap by 4 nucleotides Dsui_1298: Dsui_1298 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,361,536 to 1,362,438 _1298 Dsui_1299: Dsui_1299 - putative membrane protein, at 1,362,508 to 1,363,209 _1299 Dsui_1300: Dsui_1300 - sulfite oxidase-like oxidoreductase, at 1,363,222 to 1,364,160 _1300 Dsui_1301: Dsui_1301 - putative transmembrane transcriptional regulator (anti-sigma factor), at 1,364,207 to 1,364,983 _1301 Dsui_1302: Dsui_1302 - RNA polymerase sigma factor, sigma-70 family, at 1,364,980 to 1,365,480 _1302 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1362.487 kb on - strandat 1362.597 kb on + strand, within Dsui_1299at 1362.682 kb on - strand, within Dsui_1299at 1362.684 kb on + strandat 1362.701 kb on + strand, within Dsui_1299at 1362.709 kb on - strand, within Dsui_1299at 1362.720 kb on - strand, within Dsui_1299at 1362.746 kb on + strand, within Dsui_1299at 1362.812 kb on + strand, within Dsui_1299at 1362.904 kb on - strand, within Dsui_1299at 1362.919 kb on - strand, within Dsui_1299at 1363.052 kb on + strand, within Dsui_1299at 1363.061 kb on + strand, within Dsui_1299at 1363.072 kb on + strandat 1363.080 kb on - strand, within Dsui_1299at 1363.103 kb on - strand, within Dsui_1299at 1363.124 kb on + strand, within Dsui_1299at 1363.137 kb on - strand, within Dsui_1299at 1363.239 kb on + strandat 1363.239 kb on + strandat 1363.247 kb on - strandat 1363.247 kb on - strandat 1363.287 kb on + strandat 1363.288 kb on + strandat 1363.348 kb on + strandat 1363.418 kb on + strand, within Dsui_1300at 1363.460 kb on - strand, within Dsui_1300at 1363.566 kb on - strand, within Dsui_1300at 1363.611 kb on - strand, within Dsui_1300at 1363.727 kb on - strand, within Dsui_1300at 1363.747 kb on + strandat 1363.826 kb on + strandat 1363.862 kb on + strand, within Dsui_1300at 1363.862 kb on + strandat 1363.870 kb on - strand, within Dsui_1300at 1363.874 kb on + strand, within Dsui_1300at 1363.908 kb on - strand, within Dsui_1300at 1363.919 kb on + strand, within Dsui_1300at 1363.992 kb on - strand, within Dsui_1300at 1363.999 kb on - strand, within Dsui_1300at 1364.006 kb on - strand, within Dsui_1300at 1364.040 kb on + strandat 1364.048 kb on - strand, within Dsui_1300at 1364.048 kb on - strand, within Dsui_1300at 1364.050 kb on + strand, within Dsui_1300at 1364.058 kb on - strand, within Dsui_1300at 1364.068 kb on + strandat 1364.075 kb on + strandat 1364.075 kb on + strandat 1364.085 kb on + strandat 1364.088 kb on - strandat 1364.093 kb on - strandat 1364.182 kb on - strandat 1364.187 kb on - strandat 1364.197 kb on - strandat 1364.233 kb on + strandat 1364.244 kb on - strandat 1364.254 kb on + strandat 1364.254 kb on + strandat 1364.262 kb on - strandat 1364.262 kb on - strandat 1364.267 kb on - strandat 1364.267 kb on - strandat 1364.267 kb on - strandat 1364.290 kb on - strand, within Dsui_1301at 1364.381 kb on + strand, within Dsui_1301at 1364.383 kb on + strand, within Dsui_1301at 1364.391 kb on - strand, within Dsui_1301at 1364.557 kb on + strand, within Dsui_1301at 1364.575 kb on - strand, within Dsui_1301at 1364.635 kb on - strand, within Dsui_1301at 1364.640 kb on + strand, within Dsui_1301at 1364.663 kb on + strand, within Dsui_1301at 1364.725 kb on + strand, within Dsui_1301at 1364.738 kb on - strand, within Dsui_1301at 1364.840 kb on + strand, within Dsui_1301at 1364.840 kb on + strand, within Dsui_1301at 1364.840 kb on + strandat 1364.840 kb on + strand, within Dsui_1301at 1364.845 kb on + strand, within Dsui_1301at 1364.848 kb on - strand, within Dsui_1301at 1364.903 kb on + strand, within Dsui_1301at 1364.945 kb on + strandat 1364.945 kb on + strandat 1364.969 kb on + strandat 1364.992 kb on + strandat 1365.031 kb on + strand, within Dsui_1302at 1365.099 kb on - strand, within Dsui_1302at 1365.099 kb on - strand, within Dsui_1302

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,362,487 - +1.0
1,362,597 + Dsui_1299 0.13 -0.7
1,362,682 - Dsui_1299 0.25 -0.3
1,362,684 + -2.0
1,362,701 + Dsui_1299 0.27 -1.5
1,362,709 - Dsui_1299 0.29 -1.3
1,362,720 - Dsui_1299 0.30 -0.8
1,362,746 + Dsui_1299 0.34 -0.5
1,362,812 + Dsui_1299 0.43 -0.5
1,362,904 - Dsui_1299 0.56 -3.1
1,362,919 - Dsui_1299 0.59 +0.2
1,363,052 + Dsui_1299 0.77 -0.6
1,363,061 + Dsui_1299 0.79 -2.2
1,363,072 + -1.9
1,363,080 - Dsui_1299 0.81 +0.3
1,363,103 - Dsui_1299 0.85 +1.6
1,363,124 + Dsui_1299 0.88 -0.8
1,363,137 - Dsui_1299 0.90 -2.7
1,363,239 + -0.4
1,363,239 + -0.3
1,363,247 - +0.3
1,363,247 - +0.9
1,363,287 + -1.8
1,363,288 + -1.2
1,363,348 + -0.4
1,363,418 + Dsui_1300 0.21 -0.8
1,363,460 - Dsui_1300 0.25 -3.4
1,363,566 - Dsui_1300 0.37 -0.2
1,363,611 - Dsui_1300 0.41 -0.6
1,363,727 - Dsui_1300 0.54 -0.4
1,363,747 + +1.5
1,363,826 + -1.8
1,363,862 + Dsui_1300 0.68 -1.1
1,363,862 + -1.9
1,363,870 - Dsui_1300 0.69 -0.2
1,363,874 + Dsui_1300 0.69 -1.2
1,363,908 - Dsui_1300 0.73 -0.2
1,363,919 + Dsui_1300 0.74 -1.6
1,363,992 - Dsui_1300 0.82 +0.2
1,363,999 - Dsui_1300 0.83 -0.5
1,364,006 - Dsui_1300 0.83 -0.1
1,364,040 + -4.4
1,364,048 - Dsui_1300 0.88 -0.4
1,364,048 - Dsui_1300 0.88 -0.4
1,364,050 + Dsui_1300 0.88 -0.3
1,364,058 - Dsui_1300 0.89 +0.5
1,364,068 + -3.6
1,364,075 + -3.8
1,364,075 + -1.0
1,364,085 + -0.1
1,364,088 - -0.4
1,364,093 - -0.1
1,364,182 - -0.3
1,364,187 - +0.5
1,364,197 - +1.6
1,364,233 + -2.3
1,364,244 - -1.2
1,364,254 + -1.9
1,364,254 + -3.3
1,364,262 - -1.2
1,364,262 - -1.4
1,364,267 - -1.6
1,364,267 - -0.1
1,364,267 - -0.5
1,364,290 - Dsui_1301 0.11 -1.8
1,364,381 + Dsui_1301 0.22 -2.0
1,364,383 + Dsui_1301 0.23 -2.0
1,364,391 - Dsui_1301 0.24 -1.3
1,364,557 + Dsui_1301 0.45 -1.9
1,364,575 - Dsui_1301 0.47 -2.0
1,364,635 - Dsui_1301 0.55 -0.8
1,364,640 + Dsui_1301 0.56 -2.1
1,364,663 + Dsui_1301 0.59 -2.1
1,364,725 + Dsui_1301 0.67 -1.4
1,364,738 - Dsui_1301 0.68 -0.1
1,364,840 + Dsui_1301 0.81 -0.7
1,364,840 + Dsui_1301 0.81 +0.0
1,364,840 + -1.7
1,364,840 + Dsui_1301 0.81 -0.1
1,364,845 + Dsui_1301 0.82 -2.2
1,364,848 - Dsui_1301 0.82 -2.9
1,364,903 + Dsui_1301 0.90 -2.8
1,364,945 + -1.8
1,364,945 + -4.8
1,364,969 + -1.5
1,364,992 + -0.1
1,365,031 + Dsui_1302 0.10 +0.3
1,365,099 - Dsui_1302 0.24 -0.3
1,365,099 - Dsui_1302 0.24 +0.4

Or see this region's nucleotide sequence