Strain Fitness in Dechlorosoma suillum PS around Dsui_1298

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1297 and Dsui_1298 are separated by 5 nucleotidesDsui_1298 and Dsui_1299 are separated by 69 nucleotidesDsui_1299 and Dsui_1300 are separated by 12 nucleotides Dsui_1297: Dsui_1297 - biotin synthetase, at 1,360,523 to 1,361,530 _1297 Dsui_1298: Dsui_1298 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,361,536 to 1,362,438 _1298 Dsui_1299: Dsui_1299 - putative membrane protein, at 1,362,508 to 1,363,209 _1299 Dsui_1300: Dsui_1300 - sulfite oxidase-like oxidoreductase, at 1,363,222 to 1,364,160 _1300 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -3 -2 -1 0 1at 1360.918 kb on + strand, within Dsui_1297at 1361.279 kb on + strand, within Dsui_1297at 1361.290 kb on + strand, within Dsui_1297at 1361.355 kb on + strand, within Dsui_1297at 1362.487 kb on - strandat 1362.597 kb on + strand, within Dsui_1299at 1362.682 kb on - strand, within Dsui_1299at 1362.684 kb on + strandat 1362.701 kb on + strand, within Dsui_1299at 1362.709 kb on - strand, within Dsui_1299at 1362.720 kb on - strand, within Dsui_1299at 1362.746 kb on + strand, within Dsui_1299at 1362.812 kb on + strand, within Dsui_1299at 1362.904 kb on - strand, within Dsui_1299at 1362.919 kb on - strand, within Dsui_1299at 1363.052 kb on + strand, within Dsui_1299at 1363.061 kb on + strand, within Dsui_1299at 1363.072 kb on + strandat 1363.080 kb on - strand, within Dsui_1299at 1363.103 kb on - strand, within Dsui_1299at 1363.124 kb on + strand, within Dsui_1299at 1363.137 kb on - strand, within Dsui_1299at 1363.239 kb on + strandat 1363.239 kb on + strandat 1363.247 kb on - strandat 1363.247 kb on - strandat 1363.287 kb on + strandat 1363.288 kb on + strandat 1363.348 kb on + strandat 1363.418 kb on + strand, within Dsui_1300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
1,360,918 + Dsui_1297 0.39 -1.3
1,361,279 + Dsui_1297 0.75 +1.6
1,361,290 + Dsui_1297 0.76 +0.8
1,361,355 + Dsui_1297 0.83 +0.1
1,362,487 - +1.0
1,362,597 + Dsui_1299 0.13 -0.7
1,362,682 - Dsui_1299 0.25 -0.3
1,362,684 + -2.0
1,362,701 + Dsui_1299 0.27 -1.5
1,362,709 - Dsui_1299 0.29 -1.3
1,362,720 - Dsui_1299 0.30 -0.8
1,362,746 + Dsui_1299 0.34 -0.5
1,362,812 + Dsui_1299 0.43 -0.5
1,362,904 - Dsui_1299 0.56 -3.1
1,362,919 - Dsui_1299 0.59 +0.2
1,363,052 + Dsui_1299 0.77 -0.6
1,363,061 + Dsui_1299 0.79 -2.2
1,363,072 + -1.9
1,363,080 - Dsui_1299 0.81 +0.3
1,363,103 - Dsui_1299 0.85 +1.6
1,363,124 + Dsui_1299 0.88 -0.8
1,363,137 - Dsui_1299 0.90 -2.7
1,363,239 + -0.4
1,363,239 + -0.3
1,363,247 - +0.3
1,363,247 - +0.9
1,363,287 + -1.8
1,363,288 + -1.2
1,363,348 + -0.4
1,363,418 + Dsui_1300 0.21 -0.8

Or see this region's nucleotide sequence