Strain Fitness in Dechlorosoma suillum PS around Dsui_1164

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1163 and Dsui_1164 are separated by 49 nucleotidesDsui_1164 and Dsui_1165 overlap by 8 nucleotides Dsui_1163: Dsui_1163 - hydrogenase accessory protein HypB, at 1,219,522 to 1,220,718 _1163 Dsui_1164: Dsui_1164 - hydrogenase nickel insertion protein HypA, at 1,220,768 to 1,221,112 _1164 Dsui_1165: Dsui_1165 - Ni,Fe-hydrogenase I large subunit, at 1,221,105 to 1,222,094 _1165 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1219.801 kb on + strandat 1219.836 kb on + strand, within Dsui_1163at 1219.857 kb on + strandat 1219.863 kb on + strandat 1219.929 kb on + strand, within Dsui_1163at 1219.952 kb on - strand, within Dsui_1163at 1220.218 kb on + strand, within Dsui_1163at 1220.236 kb on - strand, within Dsui_1163at 1220.402 kb on - strand, within Dsui_1163at 1220.409 kb on - strand, within Dsui_1163at 1220.414 kb on - strand, within Dsui_1163at 1220.425 kb on + strand, within Dsui_1163at 1220.456 kb on - strand, within Dsui_1163at 1220.470 kb on + strand, within Dsui_1163at 1220.565 kb on + strand, within Dsui_1163at 1220.585 kb on - strand, within Dsui_1163at 1220.610 kb on - strandat 1220.612 kb on + strandat 1220.615 kb on - strandat 1220.683 kb on + strandat 1220.711 kb on + strandat 1220.719 kb on - strandat 1220.724 kb on - strandat 1220.849 kb on + strandat 1220.885 kb on + strand, within Dsui_1164at 1220.896 kb on + strand, within Dsui_1164at 1220.927 kb on - strand, within Dsui_1164at 1220.949 kb on + strand, within Dsui_1164at 1220.954 kb on + strandat 1220.990 kb on - strand, within Dsui_1164at 1221.005 kb on - strand, within Dsui_1164at 1221.035 kb on - strand, within Dsui_1164at 1221.044 kb on + strandat 1221.052 kb on - strand, within Dsui_1164at 1221.054 kb on - strand, within Dsui_1164at 1221.095 kb on - strandat 1221.095 kb on - strandat 1221.138 kb on - strandat 1221.159 kb on + strandat 1221.293 kb on - strand, within Dsui_1165at 1221.476 kb on + strandat 1221.494 kb on - strandat 1221.603 kb on - strandat 1221.727 kb on + strandat 1221.728 kb on - strand, within Dsui_1165at 1221.786 kb on + strand, within Dsui_1165at 1221.904 kb on + strand, within Dsui_1165at 1221.904 kb on + strandat 1221.917 kb on - strand, within Dsui_1165at 1222.078 kb on + strandat 1222.078 kb on + strandat 1222.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,219,801 + +0.6
1,219,836 + Dsui_1163 0.26 -0.6
1,219,857 + -0.1
1,219,863 + +1.1
1,219,929 + Dsui_1163 0.34 +0.8
1,219,952 - Dsui_1163 0.36 +1.2
1,220,218 + Dsui_1163 0.58 +0.2
1,220,236 - Dsui_1163 0.60 +0.6
1,220,402 - Dsui_1163 0.74 +0.9
1,220,409 - Dsui_1163 0.74 +1.4
1,220,414 - Dsui_1163 0.75 -0.8
1,220,425 + Dsui_1163 0.75 +0.0
1,220,456 - Dsui_1163 0.78 +0.7
1,220,470 + Dsui_1163 0.79 +0.8
1,220,565 + Dsui_1163 0.87 -0.6
1,220,585 - Dsui_1163 0.89 +0.8
1,220,610 - +0.8
1,220,612 + +1.3
1,220,615 - +0.4
1,220,683 + +0.4
1,220,711 + -3.2
1,220,719 - -0.4
1,220,724 - +0.5
1,220,849 + +1.0
1,220,885 + Dsui_1164 0.34 +0.1
1,220,896 + Dsui_1164 0.37 -3.9
1,220,927 - Dsui_1164 0.46 -0.5
1,220,949 + Dsui_1164 0.52 -0.6
1,220,954 + +1.8
1,220,990 - Dsui_1164 0.64 -0.6
1,221,005 - Dsui_1164 0.69 +0.1
1,221,035 - Dsui_1164 0.77 +0.2
1,221,044 + -0.6
1,221,052 - Dsui_1164 0.82 +0.5
1,221,054 - Dsui_1164 0.83 +1.1
1,221,095 - +0.9
1,221,095 - -0.0
1,221,138 - +0.1
1,221,159 + +0.1
1,221,293 - Dsui_1165 0.19 +0.8
1,221,476 + +0.6
1,221,494 - +0.0
1,221,603 - +0.7
1,221,727 + +1.2
1,221,728 - Dsui_1165 0.63 -0.2
1,221,786 + Dsui_1165 0.69 -0.8
1,221,904 + Dsui_1165 0.81 -1.5
1,221,904 + -0.2
1,221,917 - Dsui_1165 0.82 +0.4
1,222,078 + +0.0
1,222,078 + +0.1
1,222,093 + -0.9

Or see this region's nucleotide sequence