Strain Fitness in Dechlorosoma suillum PS around Dsui_1103

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1102 and Dsui_1103 overlap by 10 nucleotidesDsui_1103 and Dsui_1104 are separated by 146 nucleotidesDsui_1104 and Dsui_1105 are separated by 64 nucleotides Dsui_1102: Dsui_1102 - hypothetical protein, at 1,145,895 to 1,146,902 _1102 Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978 _1103 Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586 _1104 Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932 _1105 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -2 -1 0 1 2at 1145.934 kb on - strandat 1145.996 kb on - strand, within Dsui_1102at 1146.123 kb on - strand, within Dsui_1102at 1146.170 kb on + strand, within Dsui_1102at 1146.175 kb on + strand, within Dsui_1102at 1146.175 kb on + strand, within Dsui_1102at 1146.183 kb on - strand, within Dsui_1102at 1146.185 kb on + strand, within Dsui_1102at 1146.206 kb on + strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.329 kb on + strand, within Dsui_1102at 1146.382 kb on - strand, within Dsui_1102at 1146.681 kb on + strand, within Dsui_1102at 1146.683 kb on + strand, within Dsui_1102at 1146.691 kb on - strand, within Dsui_1102at 1146.725 kb on - strand, within Dsui_1102at 1146.728 kb on + strand, within Dsui_1102at 1146.736 kb on - strand, within Dsui_1102at 1146.736 kb on - strand, within Dsui_1102at 1146.753 kb on - strand, within Dsui_1102at 1146.826 kb on - strandat 1146.831 kb on - strandat 1146.851 kb on - strandat 1146.877 kb on + strandat 1146.915 kb on - strandat 1147.219 kb on + strand, within Dsui_1103at 1147.261 kb on + strandat 1147.398 kb on + strand, within Dsui_1103at 1147.398 kb on + strandat 1147.403 kb on + strand, within Dsui_1103at 1147.403 kb on + strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.411 kb on - strand, within Dsui_1103at 1147.416 kb on - strand, within Dsui_1103at 1147.462 kb on + strand, within Dsui_1103at 1147.558 kb on + strand, within Dsui_1103at 1147.566 kb on - strand, within Dsui_1103at 1147.585 kb on - strand, within Dsui_1103at 1147.639 kb on + strand, within Dsui_1103at 1147.781 kb on - strand, within Dsui_1103at 1147.782 kb on - strand, within Dsui_1103at 1147.788 kb on + strandat 1147.873 kb on - strandat 1147.885 kb on + strandat 1147.885 kb on + strandat 1147.893 kb on - strandat 1147.916 kb on + strandat 1147.921 kb on + strandat 1147.973 kb on + strandat 1147.976 kb on - strandat 1147.981 kb on - strandat 1148.224 kb on + strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.244 kb on + strand, within Dsui_1104at 1148.287 kb on - strandat 1148.344 kb on + strand, within Dsui_1104at 1148.405 kb on + strand, within Dsui_1104at 1148.424 kb on + strand, within Dsui_1104at 1148.438 kb on - strand, within Dsui_1104at 1148.708 kb on + strandat 1148.758 kb on - strandat 1148.787 kb on + strandat 1148.795 kb on - strandat 1148.843 kb on + strandat 1148.885 kb on - strandat 1148.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,145,934 - +0.9
1,145,996 - Dsui_1102 0.10 -0.7
1,146,123 - Dsui_1102 0.23 +0.0
1,146,170 + Dsui_1102 0.27 +0.9
1,146,175 + Dsui_1102 0.28 +2.0
1,146,175 + Dsui_1102 0.28 +0.8
1,146,183 - Dsui_1102 0.29 -0.0
1,146,185 + Dsui_1102 0.29 +1.1
1,146,206 + Dsui_1102 0.31 +0.6
1,146,214 - Dsui_1102 0.32 -0.1
1,146,214 - Dsui_1102 0.32 +1.7
1,146,214 - Dsui_1102 0.32 -0.1
1,146,214 - Dsui_1102 0.32 +1.0
1,146,329 + Dsui_1102 0.43 +0.3
1,146,382 - Dsui_1102 0.48 +1.0
1,146,681 + Dsui_1102 0.78 +0.6
1,146,683 + Dsui_1102 0.78 -0.3
1,146,691 - Dsui_1102 0.79 -0.0
1,146,725 - Dsui_1102 0.82 -0.6
1,146,728 + Dsui_1102 0.83 +0.7
1,146,736 - Dsui_1102 0.83 -0.0
1,146,736 - Dsui_1102 0.83 +0.2
1,146,753 - Dsui_1102 0.85 -0.5
1,146,826 - -0.3
1,146,831 - +0.9
1,146,851 - +0.5
1,146,877 + +0.9
1,146,915 - +0.6
1,147,219 + Dsui_1103 0.30 +0.7
1,147,261 + -2.7
1,147,398 + Dsui_1103 0.47 -0.5
1,147,398 + -2.6
1,147,403 + Dsui_1103 0.47 +0.2
1,147,403 + Dsui_1103 0.47 +1.0
1,147,406 - Dsui_1103 0.47 +0.7
1,147,406 - Dsui_1103 0.47 +1.4
1,147,406 - Dsui_1103 0.47 +0.8
1,147,411 - Dsui_1103 0.48 -1.6
1,147,416 - Dsui_1103 0.48 +1.8
1,147,462 + Dsui_1103 0.52 +0.9
1,147,558 + Dsui_1103 0.61 -0.2
1,147,566 - Dsui_1103 0.62 +0.9
1,147,585 - Dsui_1103 0.64 +0.7
1,147,639 + Dsui_1103 0.69 +0.5
1,147,781 - Dsui_1103 0.82 +0.7
1,147,782 - Dsui_1103 0.82 +0.8
1,147,788 + -0.1
1,147,873 - +1.1
1,147,885 + -0.8
1,147,885 + -1.0
1,147,893 - +1.4
1,147,916 + +0.1
1,147,921 + -0.4
1,147,973 + +1.0
1,147,976 - +0.5
1,147,981 - +0.6
1,148,224 + Dsui_1104 0.21 -0.8
1,148,232 - Dsui_1104 0.23 +0.6
1,148,232 - Dsui_1104 0.23 +0.7
1,148,232 - Dsui_1104 0.23 -0.1
1,148,244 + Dsui_1104 0.26 -1.3
1,148,287 - -1.8
1,148,344 + Dsui_1104 0.47 +0.1
1,148,405 + Dsui_1104 0.61 +0.2
1,148,424 + Dsui_1104 0.65 +0.8
1,148,438 - Dsui_1104 0.68 -0.6
1,148,708 + +0.7
1,148,758 - +0.9
1,148,787 + +0.3
1,148,795 - -2.3
1,148,843 + +0.4
1,148,885 - +0.0
1,148,950 + +0.6

Or see this region's nucleotide sequence