Strain Fitness in Dechlorosoma suillum PS around Dsui_0630

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0628 and Dsui_0629 overlap by 4 nucleotidesDsui_0629 and Dsui_0630 are separated by 72 nucleotidesDsui_0630 and Dsui_0631 are separated by 189 nucleotidesDsui_0631 and Dsui_0632 are separated by 50 nucleotides Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515 _0628 Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435 _0629 Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812 _0630 Dsui_0631: Dsui_0631 - cytochrome c551/c552, at 625,002 to 625,310 _0631 Dsui_0632: Dsui_0632 - thioredoxin domain-containing protein, at 625,361 to 627,409 _0632 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.510 kb on + strandat 622.510 kb on + strandat 622.511 kb on - strandat 622.595 kb on + strandat 622.676 kb on - strand, within Dsui_0629at 622.857 kb on + strand, within Dsui_0629at 622.880 kb on - strand, within Dsui_0629at 622.920 kb on + strand, within Dsui_0629at 622.928 kb on - strand, within Dsui_0629at 623.013 kb on + strand, within Dsui_0629at 623.057 kb on + strand, within Dsui_0629at 623.132 kb on - strandat 623.280 kb on + strand, within Dsui_0629at 623.285 kb on + strand, within Dsui_0629at 623.344 kb on - strandat 623.372 kb on - strandat 623.396 kb on + strandat 623.396 kb on + strandat 623.644 kb on + strand, within Dsui_0630at 623.659 kb on + strand, within Dsui_0630at 623.785 kb on + strand, within Dsui_0630at 623.785 kb on + strand, within Dsui_0630at 623.948 kb on - strand, within Dsui_0630at 623.948 kb on - strand, within Dsui_0630at 624.004 kb on + strand, within Dsui_0630at 624.124 kb on + strandat 624.124 kb on + strand, within Dsui_0630at 624.170 kb on + strand, within Dsui_0630at 624.178 kb on - strand, within Dsui_0630at 624.223 kb on - strand, within Dsui_0630at 624.290 kb on - strand, within Dsui_0630at 624.295 kb on + strand, within Dsui_0630at 624.355 kb on + strandat 624.447 kb on - strand, within Dsui_0630at 624.460 kb on + strand, within Dsui_0630at 624.468 kb on - strand, within Dsui_0630at 624.491 kb on - strand, within Dsui_0630at 624.496 kb on + strand, within Dsui_0630at 624.504 kb on - strand, within Dsui_0630at 624.506 kb on + strand, within Dsui_0630at 624.547 kb on - strand, within Dsui_0630at 624.559 kb on - strand, within Dsui_0630at 624.654 kb on + strand, within Dsui_0630at 624.777 kb on + strandat 624.780 kb on - strandat 624.790 kb on - strandat 624.793 kb on + strandat 625.011 kb on + strandat 625.019 kb on - strandat 625.021 kb on + strandat 625.127 kb on - strand, within Dsui_0631at 625.230 kb on + strand, within Dsui_0631at 625.250 kb on + strand, within Dsui_0631at 625.401 kb on + strandat 625.603 kb on + strand, within Dsui_0632at 625.685 kb on - strand, within Dsui_0632at 625.741 kb on - strand, within Dsui_0632at 625.748 kb on + strand, within Dsui_0632at 625.793 kb on + strand, within Dsui_0632

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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622,510 + +2.2
622,510 + +0.7
622,511 - +1.1
622,595 + +0.2
622,676 - Dsui_0629 0.18 +0.3
622,857 + Dsui_0629 0.37 +0.0
622,880 - Dsui_0629 0.40 +0.2
622,920 + Dsui_0629 0.44 +0.0
622,928 - Dsui_0629 0.45 +1.0
623,013 + Dsui_0629 0.54 -0.1
623,057 + Dsui_0629 0.59 -0.4
623,132 - +1.6
623,280 + Dsui_0629 0.83 -0.3
623,285 + Dsui_0629 0.84 -0.4
623,344 - +0.1
623,372 - +0.3
623,396 + +0.7
623,396 + +0.6
623,644 + Dsui_0630 0.10 +0.4
623,659 + Dsui_0630 0.12 +0.7
623,785 + Dsui_0630 0.21 +0.2
623,785 + Dsui_0630 0.21 -0.3
623,948 - Dsui_0630 0.34 +0.6
623,948 - Dsui_0630 0.34 -0.3
624,004 + Dsui_0630 0.38 -0.3
624,124 + -1.8
624,124 + Dsui_0630 0.47 +2.0
624,170 + Dsui_0630 0.51 +0.2
624,178 - Dsui_0630 0.51 +0.4
624,223 - Dsui_0630 0.55 +1.0
624,290 - Dsui_0630 0.60 -0.3
624,295 + Dsui_0630 0.60 +0.3
624,355 + +0.8
624,447 - Dsui_0630 0.72 +1.0
624,460 + Dsui_0630 0.73 -0.5
624,468 - Dsui_0630 0.74 +0.5
624,491 - Dsui_0630 0.75 +0.7
624,496 + Dsui_0630 0.76 -0.8
624,504 - Dsui_0630 0.76 +0.7
624,506 + Dsui_0630 0.76 -1.1
624,547 - Dsui_0630 0.80 +0.1
624,559 - Dsui_0630 0.81 -0.0
624,654 + Dsui_0630 0.88 -0.1
624,777 + +0.4
624,780 - +0.6
624,790 - -1.0
624,793 + -0.0
625,011 + +0.6
625,019 - +0.9
625,021 + -0.9
625,127 - Dsui_0631 0.40 -0.1
625,230 + Dsui_0631 0.74 +0.8
625,250 + Dsui_0631 0.80 +0.3
625,401 + -0.3
625,603 + Dsui_0632 0.12 -0.3
625,685 - Dsui_0632 0.16 +1.4
625,741 - Dsui_0632 0.19 +0.9
625,748 + Dsui_0632 0.19 +0.1
625,793 + Dsui_0632 0.21 -0.4

Or see this region's nucleotide sequence