Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0404 and Dsui_0405 overlap by 23 nucleotides Dsui_0405 and Dsui_0406 are separated by 9 nucleotides Dsui_0406 and Dsui_0407 are separated by 9 nucleotides
Dsui_0404: Dsui_0404 - 3-deoxy-D-manno-octulosonic-acid transferase, at 402,571 to 403,854
_0404
Dsui_0405: Dsui_0405 - type I secretion outer membrane protein, TolC family, at 403,832 to 405,175
_0405
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 403.989 kb on + strand, within Dsui_0405 at 404.008 kb on + strand, within Dsui_0405 at 404.084 kb on - strand, within Dsui_0405 at 404.108 kb on + strand, within Dsui_0405 at 404.116 kb on - strand, within Dsui_0405 at 404.154 kb on - strand, within Dsui_0405 at 404.160 kb on - strand, within Dsui_0405 at 404.222 kb on - strand, within Dsui_0405 at 404.229 kb on + strand, within Dsui_0405 at 404.342 kb on + strand, within Dsui_0405 at 404.342 kb on + strand, within Dsui_0405 at 404.603 kb on - strand, within Dsui_0405 at 404.623 kb on - strand, within Dsui_0405 at 404.692 kb on - strand, within Dsui_0405 at 404.702 kb on + strand, within Dsui_0405 at 404.759 kb on - strand, within Dsui_0405 at 404.787 kb on - strand, within Dsui_0405 at 404.820 kb on + strand, within Dsui_0405 at 404.864 kb on + strand at 404.875 kb on + strand, within Dsui_0405 at 404.909 kb on - strand, within Dsui_0405 at 404.914 kb on - strand, within Dsui_0405 at 404.959 kb on - strand, within Dsui_0405 at 404.968 kb on - strand, within Dsui_0405 at 404.979 kb on + strand, within Dsui_0405 at 405.003 kb on - strand, within Dsui_0405 at 405.045 kb on - strand at 405.141 kb on + strand at 405.181 kb on + strand at 405.189 kb on - strand at 405.189 kb on - strand at 405.191 kb on - strand at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 403,989 + Dsui_0405 0.12 -0.5 404,008 + Dsui_0405 0.13 -3.0 404,084 - Dsui_0405 0.19 -2.1 404,108 + Dsui_0405 0.21 -3.5 404,116 - Dsui_0405 0.21 +4.7 404,154 - Dsui_0405 0.24 -1.8 404,160 - Dsui_0405 0.24 -0.3 404,222 - Dsui_0405 0.29 -2.4 404,229 + Dsui_0405 0.30 -3.9 404,342 + Dsui_0405 0.38 -2.6 404,342 + Dsui_0405 0.38 -2.5 404,603 - Dsui_0405 0.57 -3.4 404,623 - Dsui_0405 0.59 -1.4 404,692 - Dsui_0405 0.64 -1.5 404,702 + Dsui_0405 0.65 -1.5 404,759 - Dsui_0405 0.69 -2.7 404,787 - Dsui_0405 0.71 -3.9 404,820 + Dsui_0405 0.74 -4.0 404,864 + -1.9 404,875 + Dsui_0405 0.78 -2.9 404,909 - Dsui_0405 0.80 -2.0 404,914 - Dsui_0405 0.81 -3.3 404,959 - Dsui_0405 0.84 -2.1 404,968 - Dsui_0405 0.85 -2.6 404,979 + Dsui_0405 0.85 -3.4 405,003 - Dsui_0405 0.87 -3.4 405,045 - -2.5 405,141 + -2.8 405,181 + -1.3 405,189 - -0.4 405,189 - -0.9 405,191 - -3.0 405,286 - Dsui_0406 0.31 +0.4 405,359 + Dsui_0406 0.54 -2.6 405,367 - Dsui_0406 0.56 +0.5 405,683 - Dsui_0407 0.25 -2.7
Or see this region's nucleotide sequence