Strain Fitness in Dechlorosoma suillum PS around Dsui_0083

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0082 and Dsui_0083 are separated by 2 nucleotidesDsui_0083 and Dsui_0084 are separated by 10 nucleotides Dsui_0082: Dsui_0082 - UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase, at 79,093 to 80,253 _0082 Dsui_0083: Dsui_0083 - UDP-N-acetylglucosamine 4,6-dehydratase, at 80,256 to 81,254 _0083 Dsui_0084: Dsui_0084 - ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain, at 81,265 to 83,040 _0084 Position (kb) 80 81 82Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 80.295 kb on + strandat 80.298 kb on - strandat 80.344 kb on - strandat 80.346 kb on + strandat 80.346 kb on + strandat 80.353 kb on - strandat 80.354 kb on - strandat 80.354 kb on - strandat 80.413 kb on + strand, within Dsui_0083at 80.422 kb on + strand, within Dsui_0083at 80.459 kb on - strand, within Dsui_0083at 80.470 kb on + strand, within Dsui_0083at 80.472 kb on + strand, within Dsui_0083at 80.472 kb on - strand, within Dsui_0083at 80.534 kb on - strand, within Dsui_0083at 80.550 kb on - strand, within Dsui_0083at 80.561 kb on + strand, within Dsui_0083at 80.615 kb on + strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.664 kb on + strand, within Dsui_0083at 80.690 kb on + strand, within Dsui_0083at 80.708 kb on - strand, within Dsui_0083at 80.730 kb on - strand, within Dsui_0083at 80.845 kb on + strand, within Dsui_0083at 80.860 kb on - strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.871 kb on - strand, within Dsui_0083at 80.887 kb on + strand, within Dsui_0083at 80.888 kb on - strand, within Dsui_0083at 80.931 kb on - strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.979 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.986 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.033 kb on + strand, within Dsui_0083at 81.166 kb on + strandat 81.172 kb on + strandat 81.174 kb on - strandat 81.174 kb on - strandat 81.251 kb on + strandat 81.290 kb on - strandat 81.322 kb on - strandat 81.374 kb on - strandat 81.392 kb on + strandat 81.395 kb on + strandat 81.403 kb on - strandat 81.490 kb on - strand, within Dsui_0084at 81.490 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.583 kb on - strand, within Dsui_0084at 81.712 kb on - strand, within Dsui_0084at 81.765 kb on + strand, within Dsui_0084at 81.799 kb on + strand, within Dsui_0084at 81.817 kb on + strand, within Dsui_0084at 81.825 kb on - strand, within Dsui_0084at 81.859 kb on - strand, within Dsui_0084at 81.893 kb on + strand, within Dsui_0084at 81.976 kb on + strand, within Dsui_0084at 81.998 kb on + strand, within Dsui_0084at 82.012 kb on - strand, within Dsui_0084at 82.115 kb on + strand, within Dsui_0084at 82.178 kb on - strand, within Dsui_0084at 82.183 kb on - strand, within Dsui_0084at 82.188 kb on + strand, within Dsui_0084at 82.207 kb on + strand, within Dsui_0084

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
80,295 + -3.0
80,298 - -1.0
80,344 - -2.9
80,346 + +0.2
80,346 + -1.5
80,353 - -4.0
80,354 - -1.5
80,354 - -2.8
80,413 + Dsui_0083 0.16 -1.6
80,422 + Dsui_0083 0.17 -3.9
80,459 - Dsui_0083 0.20 -2.7
80,470 + Dsui_0083 0.21 -3.6
80,472 + Dsui_0083 0.22 -3.4
80,472 - Dsui_0083 0.22 -1.8
80,534 - Dsui_0083 0.28 -2.3
80,550 - Dsui_0083 0.29 -3.2
80,561 + Dsui_0083 0.31 -3.8
80,615 + Dsui_0083 0.36 -2.2
80,628 - Dsui_0083 0.37 -2.9
80,628 - Dsui_0083 0.37 -2.0
80,630 + Dsui_0083 0.37 +0.3
80,630 + Dsui_0083 0.37 -3.8
80,642 + Dsui_0083 0.39 -2.4
80,642 + Dsui_0083 0.39 -3.4
80,664 + Dsui_0083 0.41 -1.5
80,690 + Dsui_0083 0.43 -3.4
80,708 - Dsui_0083 0.45 -2.4
80,730 - Dsui_0083 0.47 -4.4
80,845 + Dsui_0083 0.59 -3.0
80,860 - Dsui_0083 0.60 -1.4
80,863 + Dsui_0083 0.61 -2.0
80,863 + Dsui_0083 0.61 -2.8
80,871 - Dsui_0083 0.62 -3.9
80,887 + Dsui_0083 0.63 -2.6
80,888 - Dsui_0083 0.63 -1.9
80,931 - Dsui_0083 0.68 -0.3
80,976 + Dsui_0083 0.72 -2.0
80,976 + Dsui_0083 0.72 -3.8
80,979 - Dsui_0083 0.72 -2.8
80,984 - Dsui_0083 0.73 -2.0
80,984 - Dsui_0083 0.73 -3.2
80,984 - Dsui_0083 0.73 -2.2
80,984 - Dsui_0083 0.73 -2.6
80,984 - Dsui_0083 0.73 -2.1
80,986 + Dsui_0083 0.73 +0.2
81,010 + Dsui_0083 0.75 -0.9
81,010 + Dsui_0083 0.75 -1.9
81,033 + Dsui_0083 0.78 -1.7
81,166 + -4.7
81,172 + -3.2
81,174 - -1.7
81,174 - -2.6
81,251 + +0.3
81,290 - +1.2
81,322 - +0.9
81,374 - -2.6
81,392 + -2.5
81,395 + -3.2
81,403 - -1.3
81,490 - Dsui_0084 0.13 -2.2
81,490 - Dsui_0084 0.13 -1.3
81,492 - Dsui_0084 0.13 -3.8
81,492 - Dsui_0084 0.13 -2.5
81,583 - Dsui_0084 0.18 -2.8
81,712 - Dsui_0084 0.25 -1.9
81,765 + Dsui_0084 0.28 -5.0
81,799 + Dsui_0084 0.30 -3.2
81,817 + Dsui_0084 0.31 -3.5
81,825 - Dsui_0084 0.32 -4.8
81,859 - Dsui_0084 0.33 -3.0
81,893 + Dsui_0084 0.35 -2.9
81,976 + Dsui_0084 0.40 -4.6
81,998 + Dsui_0084 0.41 -2.4
82,012 - Dsui_0084 0.42 -2.0
82,115 + Dsui_0084 0.48 -1.3
82,178 - Dsui_0084 0.51 -4.1
82,183 - Dsui_0084 0.52 -3.9
82,188 + Dsui_0084 0.52 -3.9
82,207 + Dsui_0084 0.53 -0.0

Or see this region's nucleotide sequence