Strain Fitness in Dechlorosoma suillum PS around Dsui_0055

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0053 and Dsui_0054 are separated by 11 nucleotidesDsui_0054 and Dsui_0055 overlap by 4 nucleotidesDsui_0055 and Dsui_0056 overlap by 14 nucleotidesDsui_0056 and Dsui_0057 overlap by 4 nucleotides Dsui_0053: Dsui_0053 - hypothetical protein, at 50,925 to 51,629 _0053 Dsui_0054: Dsui_0054 - glycosyl transferase possibly involved in lipopolysaccharide synthesis, at 51,641 to 52,201 _0054 Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385 _0055 Dsui_0056: Dsui_0056 - glycosyl transferase, at 53,372 to 54,301 _0056 Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488 _0057 Position (kb) 52 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 51.495 kb on + strand, within Dsui_0053at 51.541 kb on - strand, within Dsui_0053at 51.580 kb on - strandat 51.580 kb on - strandat 51.583 kb on + strandat 51.591 kb on - strandat 52.211 kb on + strandat 52.399 kb on - strand, within Dsui_0055at 52.578 kb on - strand, within Dsui_0055at 52.583 kb on - strand, within Dsui_0055at 52.607 kb on + strand, within Dsui_0055at 52.685 kb on + strand, within Dsui_0055at 52.826 kb on - strand, within Dsui_0055at 52.865 kb on + strand, within Dsui_0055at 52.870 kb on + strandat 52.958 kb on + strandat 52.966 kb on - strand, within Dsui_0055at 52.994 kb on + strand, within Dsui_0055at 52.994 kb on + strandat 52.994 kb on + strand, within Dsui_0055at 53.002 kb on - strand, within Dsui_0055at 53.160 kb on + strandat 53.173 kb on - strand, within Dsui_0055at 53.214 kb on - strand, within Dsui_0055at 53.223 kb on + strand, within Dsui_0055at 53.250 kb on + strand, within Dsui_0055at 53.296 kb on - strandat 53.499 kb on - strand, within Dsui_0056at 53.557 kb on - strand, within Dsui_0056at 53.593 kb on - strand, within Dsui_0056at 53.637 kb on - strand, within Dsui_0056at 53.650 kb on + strandat 53.712 kb on - strand, within Dsui_0056at 53.770 kb on - strand, within Dsui_0056at 53.790 kb on + strand, within Dsui_0056at 53.829 kb on + strand, within Dsui_0056at 53.952 kb on - strand, within Dsui_0056at 54.093 kb on - strand, within Dsui_0056at 54.093 kb on - strand, within Dsui_0056at 54.279 kb on + strandat 54.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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51,495 + Dsui_0053 0.81 +1.0
51,541 - Dsui_0053 0.87 +1.5
51,580 - +1.3
51,580 - +0.8
51,583 + -0.2
51,591 - +0.5
52,211 + -0.8
52,399 - Dsui_0055 0.17 -1.3
52,578 - Dsui_0055 0.32 -1.5
52,583 - Dsui_0055 0.32 -1.4
52,607 + Dsui_0055 0.34 -1.8
52,685 + Dsui_0055 0.41 -2.2
52,826 - Dsui_0055 0.53 -1.8
52,865 + Dsui_0055 0.56 -2.2
52,870 + -1.3
52,958 + -1.6
52,966 - Dsui_0055 0.65 -0.9
52,994 + Dsui_0055 0.67 -2.6
52,994 + -0.5
52,994 + Dsui_0055 0.67 -2.2
53,002 - Dsui_0055 0.68 -3.8
53,160 + +0.5
53,173 - Dsui_0055 0.82 -1.5
53,214 - Dsui_0055 0.86 -2.0
53,223 + Dsui_0055 0.86 -1.8
53,250 + Dsui_0055 0.89 -3.0
53,296 - -2.5
53,499 - Dsui_0056 0.14 -1.9
53,557 - Dsui_0056 0.20 -4.1
53,593 - Dsui_0056 0.24 -3.0
53,637 - Dsui_0056 0.28 -2.0
53,650 + -1.0
53,712 - Dsui_0056 0.37 -4.3
53,770 - Dsui_0056 0.43 -1.4
53,790 + Dsui_0056 0.45 -1.6
53,829 + Dsui_0056 0.49 -2.5
53,952 - Dsui_0056 0.62 -1.4
54,093 - Dsui_0056 0.78 -3.5
54,093 - Dsui_0056 0.78 -3.1
54,279 + -1.0
54,340 - +0.7

Or see this region's nucleotide sequence