Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19220

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19215 and CSW01_19220 are separated by 130 nucleotidesCSW01_19220 and CSW01_19225 are separated by 152 nucleotides CSW01_19215: CSW01_19215 - glucosamine-6-phosphate deaminase, at 970,615 to 971,415 _19215 CSW01_19220: CSW01_19220 - sel1 repeat family protein, at 971,546 to 972,703 _19220 CSW01_19225: CSW01_19225 - transcriptional regulator, at 972,856 to 973,692 _19225 Position (kb) 971 972 973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 970.622 kb on - strandat 970.663 kb on + strandat 970.663 kb on + strandat 970.779 kb on + strand, within CSW01_19215at 970.799 kb on + strand, within CSW01_19215at 970.821 kb on - strand, within CSW01_19215at 970.855 kb on - strand, within CSW01_19215at 970.857 kb on + strand, within CSW01_19215at 970.859 kb on - strand, within CSW01_19215at 970.938 kb on - strand, within CSW01_19215at 970.946 kb on - strand, within CSW01_19215at 971.013 kb on + strand, within CSW01_19215at 971.013 kb on + strand, within CSW01_19215at 971.036 kb on - strand, within CSW01_19215at 971.155 kb on + strand, within CSW01_19215at 971.170 kb on - strand, within CSW01_19215at 971.180 kb on - strand, within CSW01_19215at 971.199 kb on - strand, within CSW01_19215at 971.227 kb on + strand, within CSW01_19215at 971.232 kb on + strand, within CSW01_19215at 971.247 kb on + strand, within CSW01_19215at 971.260 kb on + strand, within CSW01_19215at 971.270 kb on + strand, within CSW01_19215at 971.288 kb on - strand, within CSW01_19215at 971.288 kb on - strand, within CSW01_19215at 971.290 kb on + strand, within CSW01_19215at 971.304 kb on + strand, within CSW01_19215at 971.318 kb on - strand, within CSW01_19215at 971.330 kb on - strand, within CSW01_19215at 971.527 kb on + strandat 971.528 kb on + strandat 971.567 kb on - strandat 971.629 kb on - strandat 971.727 kb on + strand, within CSW01_19220at 971.879 kb on - strand, within CSW01_19220at 971.924 kb on + strand, within CSW01_19220at 971.963 kb on + strand, within CSW01_19220at 971.970 kb on + strand, within CSW01_19220at 971.971 kb on - strand, within CSW01_19220at 971.978 kb on - strand, within CSW01_19220at 972.045 kb on - strand, within CSW01_19220at 972.056 kb on + strand, within CSW01_19220at 972.085 kb on - strand, within CSW01_19220at 972.087 kb on - strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.097 kb on - strand, within CSW01_19220at 972.097 kb on - strand, within CSW01_19220at 972.223 kb on + strand, within CSW01_19220at 972.223 kb on + strand, within CSW01_19220at 972.231 kb on - strand, within CSW01_19220at 972.255 kb on - strand, within CSW01_19220at 972.255 kb on - strand, within CSW01_19220at 972.305 kb on + strand, within CSW01_19220at 972.313 kb on - strand, within CSW01_19220at 972.313 kb on - strand, within CSW01_19220at 972.319 kb on + strand, within CSW01_19220at 972.454 kb on + strand, within CSW01_19220at 972.470 kb on - strand, within CSW01_19220at 972.560 kb on + strand, within CSW01_19220at 972.568 kb on - strand, within CSW01_19220at 972.599 kb on - strandat 972.655 kb on + strandat 972.669 kb on - strandat 972.725 kb on + strandat 972.725 kb on + strandat 972.727 kb on - strandat 972.733 kb on - strandat 972.733 kb on - strandat 972.733 kb on - strandat 972.748 kb on - strandat 972.748 kb on - strandat 972.748 kb on - strandat 972.896 kb on - strandat 972.899 kb on + strandat 972.907 kb on - strandat 972.958 kb on + strand, within CSW01_19225at 972.958 kb on + strand, within CSW01_19225at 972.966 kb on - strand, within CSW01_19225at 973.217 kb on + strand, within CSW01_19225at 973.238 kb on + strand, within CSW01_19225at 973.335 kb on + strand, within CSW01_19225at 973.335 kb on + strand, within CSW01_19225at 973.350 kb on + strand, within CSW01_19225at 973.350 kb on + strand, within CSW01_19225at 973.358 kb on - strand, within CSW01_19225at 973.358 kb on - strand, within CSW01_19225at 973.374 kb on - strand, within CSW01_19225at 973.422 kb on + strand, within CSW01_19225at 973.444 kb on + strand, within CSW01_19225at 973.525 kb on + strand, within CSW01_19225at 973.602 kb on - strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.631 kb on + strandat 973.631 kb on + strandat 973.639 kb on - strandat 973.639 kb on - strandat 973.679 kb on + strandat 973.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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970,622 - -0.1
970,663 + +1.9
970,663 + +0.2
970,779 + CSW01_19215 0.20 +1.1
970,799 + CSW01_19215 0.23 -1.3
970,821 - CSW01_19215 0.26 -0.8
970,855 - CSW01_19215 0.30 +0.3
970,857 + CSW01_19215 0.30 -1.1
970,859 - CSW01_19215 0.30 +0.6
970,938 - CSW01_19215 0.40 -3.4
970,946 - CSW01_19215 0.41 -0.6
971,013 + CSW01_19215 0.50 -0.8
971,013 + CSW01_19215 0.50 -2.4
971,036 - CSW01_19215 0.53 -2.8
971,155 + CSW01_19215 0.67 -0.4
971,170 - CSW01_19215 0.69 -0.7
971,180 - CSW01_19215 0.71 -0.4
971,199 - CSW01_19215 0.73 +1.0
971,227 + CSW01_19215 0.76 -3.3
971,232 + CSW01_19215 0.77 -2.8
971,247 + CSW01_19215 0.79 -1.8
971,260 + CSW01_19215 0.81 +0.8
971,270 + CSW01_19215 0.82 -0.4
971,288 - CSW01_19215 0.84 -0.3
971,288 - CSW01_19215 0.84 -0.9
971,290 + CSW01_19215 0.84 +1.1
971,304 + CSW01_19215 0.86 -0.1
971,318 - CSW01_19215 0.88 +0.8
971,330 - CSW01_19215 0.89 -0.8
971,527 + -3.5
971,528 + -0.5
971,567 - +1.7
971,629 - +2.3
971,727 + CSW01_19220 0.16 -0.9
971,879 - CSW01_19220 0.29 -1.4
971,924 + CSW01_19220 0.33 -2.4
971,963 + CSW01_19220 0.36 -2.1
971,970 + CSW01_19220 0.37 -1.3
971,971 - CSW01_19220 0.37 +0.4
971,978 - CSW01_19220 0.37 +0.2
972,045 - CSW01_19220 0.43 -1.7
972,056 + CSW01_19220 0.44 -0.7
972,085 - CSW01_19220 0.47 +1.1
972,087 - CSW01_19220 0.47 -0.0
972,089 + CSW01_19220 0.47 -1.6
972,089 + CSW01_19220 0.47 +0.3
972,089 + CSW01_19220 0.47 +1.7
972,097 - CSW01_19220 0.48 +0.8
972,097 - CSW01_19220 0.48 +0.4
972,223 + CSW01_19220 0.58 +0.4
972,223 + CSW01_19220 0.58 -2.7
972,231 - CSW01_19220 0.59 +0.8
972,255 - CSW01_19220 0.61 +0.2
972,255 - CSW01_19220 0.61 -3.1
972,305 + CSW01_19220 0.66 +0.8
972,313 - CSW01_19220 0.66 -3.1
972,313 - CSW01_19220 0.66 -4.6
972,319 + CSW01_19220 0.67 +0.2
972,454 + CSW01_19220 0.78 -3.3
972,470 - CSW01_19220 0.80 -0.9
972,560 + CSW01_19220 0.88 +0.9
972,568 - CSW01_19220 0.88 -3.6
972,599 - -2.7
972,655 + +1.0
972,669 - +0.7
972,725 + +0.7
972,725 + -0.3
972,727 - +1.3
972,733 - -1.1
972,733 - +0.1
972,733 - +2.3
972,748 - +1.0
972,748 - -2.2
972,748 - +1.2
972,896 - -1.8
972,899 + -2.0
972,907 - +0.7
972,958 + CSW01_19225 0.12 +0.1
972,958 + CSW01_19225 0.12 +0.6
972,966 - CSW01_19225 0.13 -0.8
973,217 + CSW01_19225 0.43 +0.4
973,238 + CSW01_19225 0.46 +0.4
973,335 + CSW01_19225 0.57 +0.5
973,335 + CSW01_19225 0.57 +1.7
973,350 + CSW01_19225 0.59 -0.1
973,350 + CSW01_19225 0.59 -0.7
973,358 - CSW01_19225 0.60 -1.3
973,358 - CSW01_19225 0.60 +0.3
973,374 - CSW01_19225 0.62 -1.0
973,422 + CSW01_19225 0.68 -1.4
973,444 + CSW01_19225 0.70 -2.8
973,525 + CSW01_19225 0.80 -4.5
973,602 - CSW01_19225 0.89 +0.3
973,604 + CSW01_19225 0.89 +0.5
973,604 + CSW01_19225 0.89 -2.4
973,604 + CSW01_19225 0.89 -0.4
973,604 + CSW01_19225 0.89 +0.8
973,604 + CSW01_19225 0.89 -0.2
973,604 + CSW01_19225 0.89 -1.3
973,612 - -0.6
973,612 - +1.8
973,612 - +1.2
973,612 - +1.0
973,612 - +0.2
973,612 - +0.6
973,612 - +0.4
973,612 - -1.1
973,612 - -0.7
973,612 - -1.8
973,631 + +0.7
973,631 + -1.1
973,639 - +0.1
973,639 - +0.7
973,679 + -0.2
973,687 - -2.4

Or see this region's nucleotide sequence