Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19145

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19135 and CSW01_19140 are separated by 96 nucleotidesCSW01_19140 and CSW01_19145 are separated by 255 nucleotidesCSW01_19145 and CSW01_19150 are separated by 160 nucleotides CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578 _19135 CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112 _19140 CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363 _19145 CSW01_19150: CSW01_19150 - EamA family transporter, at 958,524 to 959,420 _19150 Position (kb) 957 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 956.419 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.503 kb on + strand, within CSW01_19135at 956.503 kb on - strand, within CSW01_19135at 956.506 kb on - strand, within CSW01_19135at 956.574 kb on + strandat 956.582 kb on - strandat 956.582 kb on - strandat 956.729 kb on + strand, within CSW01_19140at 956.729 kb on - strand, within CSW01_19140at 956.731 kb on + strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.743 kb on + strand, within CSW01_19140at 956.806 kb on - strand, within CSW01_19140at 956.828 kb on - strand, within CSW01_19140at 956.844 kb on + strand, within CSW01_19140at 956.850 kb on - strand, within CSW01_19140at 956.948 kb on + strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.045 kb on + strand, within CSW01_19140at 957.048 kb on - strand, within CSW01_19140at 957.060 kb on - strand, within CSW01_19140at 957.072 kb on + strandat 957.075 kb on - strandat 957.088 kb on - strandat 957.098 kb on + strandat 957.099 kb on + strandat 957.099 kb on + strandat 957.214 kb on - strandat 957.319 kb on - strandat 957.416 kb on + strandat 957.424 kb on - strandat 957.430 kb on - strandat 957.485 kb on - strand, within CSW01_19145at 957.516 kb on - strand, within CSW01_19145at 957.531 kb on + strand, within CSW01_19145at 957.618 kb on + strand, within CSW01_19145at 957.729 kb on - strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.811 kb on - strand, within CSW01_19145at 957.813 kb on + strand, within CSW01_19145at 957.821 kb on - strand, within CSW01_19145at 957.851 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.936 kb on - strand, within CSW01_19145at 957.965 kb on + strand, within CSW01_19145at 957.978 kb on - strand, within CSW01_19145at 957.996 kb on + strand, within CSW01_19145at 957.997 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.080 kb on - strand, within CSW01_19145at 958.118 kb on + strand, within CSW01_19145at 958.124 kb on - strand, within CSW01_19145at 958.301 kb on - strandat 958.343 kb on + strandat 958.346 kb on - strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.412 kb on + strandat 958.443 kb on + strandat 958.462 kb on - strandat 958.484 kb on - strandat 958.535 kb on + strandat 958.590 kb on + strandat 958.616 kb on - strand, within CSW01_19150at 958.635 kb on + strand, within CSW01_19150at 958.656 kb on + strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.828 kb on + strand, within CSW01_19150at 958.838 kb on + strand, within CSW01_19150at 958.873 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.959 kb on - strand, within CSW01_19150at 959.015 kb on - strand, within CSW01_19150at 959.083 kb on + strand, within CSW01_19150at 959.171 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.184 kb on - strand, within CSW01_19150at 959.191 kb on - strand, within CSW01_19150at 959.319 kb on - strand, within CSW01_19150

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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956,419 + CSW01_19135 0.65 -0.1
956,472 + CSW01_19135 0.77 +1.1
956,472 + CSW01_19135 0.77 +0.7
956,503 + CSW01_19135 0.83 +0.9
956,503 - CSW01_19135 0.83 -1.2
956,506 - CSW01_19135 0.84 +0.8
956,574 + -0.4
956,582 - +0.6
956,582 - -0.6
956,729 + CSW01_19140 0.12 -3.0
956,729 - CSW01_19140 0.12 +0.2
956,731 + CSW01_19140 0.13 -1.3
956,742 - CSW01_19140 0.15 -0.4
956,742 - CSW01_19140 0.15 +0.3
956,743 + CSW01_19140 0.16 +2.7
956,806 - CSW01_19140 0.30 +1.3
956,828 - CSW01_19140 0.35 -2.1
956,844 + CSW01_19140 0.39 +1.0
956,850 - CSW01_19140 0.40 +0.8
956,948 + CSW01_19140 0.62 -1.2
956,978 - CSW01_19140 0.69 +0.8
956,978 - CSW01_19140 0.69 -0.7
957,035 - CSW01_19140 0.82 -2.2
957,035 - CSW01_19140 0.82 +0.6
957,040 + CSW01_19140 0.83 +2.9
957,040 + CSW01_19140 0.83 +0.9
957,045 + CSW01_19140 0.84 -1.7
957,048 - CSW01_19140 0.85 -2.1
957,060 - CSW01_19140 0.88 -0.4
957,072 + +2.3
957,075 - +0.4
957,088 - -0.7
957,098 + -1.3
957,099 + -0.1
957,099 + +1.1
957,214 - +0.9
957,319 - -3.4
957,416 + +0.7
957,424 - -1.1
957,430 - +0.3
957,485 - CSW01_19145 0.12 -2.1
957,516 - CSW01_19145 0.15 -0.1
957,531 + CSW01_19145 0.16 -2.6
957,618 + CSW01_19145 0.25 +1.7
957,729 - CSW01_19145 0.36 +0.7
957,803 + CSW01_19145 0.44 -2.3
957,803 + CSW01_19145 0.44 -2.0
957,803 + CSW01_19145 0.44 -0.4
957,803 + CSW01_19145 0.44 +0.5
957,811 - CSW01_19145 0.44 -2.7
957,813 + CSW01_19145 0.45 +1.5
957,821 - CSW01_19145 0.45 -0.3
957,851 + CSW01_19145 0.48 -0.3
957,918 + CSW01_19145 0.55 +1.4
957,918 + CSW01_19145 0.55 -2.5
957,936 - CSW01_19145 0.57 -2.2
957,965 + CSW01_19145 0.60 -0.2
957,978 - CSW01_19145 0.61 -0.2
957,996 + CSW01_19145 0.63 -0.4
957,997 + CSW01_19145 0.63 +0.6
958,033 + CSW01_19145 0.67 +1.0
958,033 + CSW01_19145 0.67 -0.9
958,041 - CSW01_19145 0.68 +0.2
958,041 - CSW01_19145 0.68 -2.1
958,041 - CSW01_19145 0.68 +0.3
958,080 - CSW01_19145 0.71 -0.6
958,118 + CSW01_19145 0.75 -0.1
958,124 - CSW01_19145 0.76 -0.1
958,301 - +0.7
958,343 + +0.7
958,346 - +1.0
958,371 + -0.4
958,371 + -3.0
958,371 + +0.8
958,371 + +0.9
958,371 + +0.4
958,379 - -1.6
958,379 - +3.0
958,379 - -1.8
958,379 - +1.6
958,379 - -1.1
958,412 + -1.6
958,443 + -0.0
958,462 - +0.1
958,484 - -1.8
958,535 + -0.2
958,590 + +0.6
958,616 - CSW01_19150 0.10 -1.3
958,635 + CSW01_19150 0.12 +1.0
958,656 + CSW01_19150 0.15 -0.4
958,659 - CSW01_19150 0.15 -1.0
958,659 - CSW01_19150 0.15 -1.3
958,828 + CSW01_19150 0.34 +0.3
958,838 + CSW01_19150 0.35 +1.8
958,873 - CSW01_19150 0.39 -1.0
958,878 - CSW01_19150 0.39 +0.6
958,878 - CSW01_19150 0.39 -2.0
958,883 - CSW01_19150 0.40 -0.8
958,883 - CSW01_19150 0.40 -0.0
958,959 - CSW01_19150 0.48 +0.7
959,015 - CSW01_19150 0.55 -1.6
959,083 + CSW01_19150 0.62 +0.5
959,171 + CSW01_19150 0.72 +1.0
959,183 + CSW01_19150 0.73 +1.7
959,183 + CSW01_19150 0.73 -0.6
959,184 - CSW01_19150 0.74 -2.9
959,191 - CSW01_19150 0.74 +1.7
959,319 - CSW01_19150 0.89 +0.4

Or see this region's nucleotide sequence