Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19135

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19125 and CSW01_19130 are separated by 51 nucleotidesCSW01_19130 and CSW01_19135 are separated by 115 nucleotidesCSW01_19135 and CSW01_19140 are separated by 96 nucleotidesCSW01_19140 and CSW01_19145 are separated by 255 nucleotides CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338 _19125 CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004 _19130 CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578 _19135 CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112 _19140 CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363 _19145 Position (kb) 956 957Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 955.136 kb on + strand, within CSW01_19125at 955.247 kb on - strand, within CSW01_19125at 955.286 kb on - strand, within CSW01_19125at 955.296 kb on - strand, within CSW01_19125at 955.312 kb on - strandat 955.319 kb on + strandat 955.322 kb on - strandat 955.322 kb on - strandat 955.333 kb on + strandat 955.361 kb on - strandat 955.361 kb on - strandat 955.365 kb on - strandat 955.415 kb on + strandat 955.425 kb on + strandat 955.428 kb on - strandat 955.433 kb on - strandat 955.480 kb on + strand, within CSW01_19130at 955.511 kb on - strand, within CSW01_19130at 955.604 kb on + strand, within CSW01_19130at 955.604 kb on - strand, within CSW01_19130at 955.682 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.732 kb on + strand, within CSW01_19130at 955.733 kb on - strand, within CSW01_19130at 955.735 kb on - strand, within CSW01_19130at 955.815 kb on - strand, within CSW01_19130at 955.852 kb on - strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.876 kb on - strand, within CSW01_19130at 955.917 kb on - strand, within CSW01_19130at 955.942 kb on - strand, within CSW01_19130at 956.000 kb on - strandat 956.011 kb on + strandat 956.019 kb on - strandat 956.173 kb on + strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.220 kb on - strand, within CSW01_19135at 956.220 kb on - strand, within CSW01_19135at 956.222 kb on + strand, within CSW01_19135at 956.222 kb on + strand, within CSW01_19135at 956.225 kb on - strand, within CSW01_19135at 956.261 kb on - strand, within CSW01_19135at 956.419 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.503 kb on + strand, within CSW01_19135at 956.503 kb on - strand, within CSW01_19135at 956.506 kb on - strand, within CSW01_19135at 956.574 kb on + strandat 956.582 kb on - strandat 956.582 kb on - strandat 956.729 kb on + strand, within CSW01_19140at 956.729 kb on - strand, within CSW01_19140at 956.731 kb on + strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.743 kb on + strand, within CSW01_19140at 956.806 kb on - strand, within CSW01_19140at 956.828 kb on - strand, within CSW01_19140at 956.844 kb on + strand, within CSW01_19140at 956.850 kb on - strand, within CSW01_19140at 956.948 kb on + strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.045 kb on + strand, within CSW01_19140at 957.048 kb on - strand, within CSW01_19140at 957.060 kb on - strand, within CSW01_19140at 957.072 kb on + strandat 957.075 kb on - strandat 957.088 kb on - strandat 957.098 kb on + strandat 957.099 kb on + strandat 957.099 kb on + strandat 957.214 kb on - strandat 957.319 kb on - strandat 957.416 kb on + strandat 957.424 kb on - strandat 957.430 kb on - strandat 957.485 kb on - strand, within CSW01_19145at 957.516 kb on - strand, within CSW01_19145at 957.531 kb on + strand, within CSW01_19145

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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955,136 + CSW01_19125 0.36 -1.8
955,247 - CSW01_19125 0.71 +0.3
955,286 - CSW01_19125 0.83 -1.8
955,296 - CSW01_19125 0.86 -2.7
955,312 - -3.1
955,319 + +1.6
955,322 - +0.6
955,322 - +3.3
955,333 + -0.1
955,361 - -2.8
955,361 - +0.4
955,365 - +2.3
955,415 + -0.3
955,425 + -3.3
955,428 - +0.4
955,433 - -1.8
955,480 + CSW01_19130 0.15 -1.3
955,511 - CSW01_19130 0.20 +0.3
955,604 + CSW01_19130 0.35 +0.5
955,604 - CSW01_19130 0.35 -1.8
955,682 - CSW01_19130 0.47 +1.9
955,723 - CSW01_19130 0.54 +0.1
955,723 - CSW01_19130 0.54 -4.0
955,732 + CSW01_19130 0.56 -2.4
955,733 - CSW01_19130 0.56 +2.0
955,735 - CSW01_19130 0.56 +0.9
955,815 - CSW01_19130 0.69 -0.5
955,852 - CSW01_19130 0.75 +1.4
955,868 + CSW01_19130 0.78 -2.0
955,868 + CSW01_19130 0.78 -1.7
955,876 - CSW01_19130 0.79 +1.3
955,917 - CSW01_19130 0.86 +0.7
955,942 - CSW01_19130 0.90 -2.6
956,000 - +0.4
956,011 + +1.2
956,019 - +0.2
956,173 + CSW01_19135 0.12 +0.4
956,181 - CSW01_19135 0.13 +0.6
956,181 - CSW01_19135 0.13 -0.4
956,181 - CSW01_19135 0.13 +0.8
956,220 - CSW01_19135 0.22 +0.4
956,220 - CSW01_19135 0.22 +0.7
956,222 + CSW01_19135 0.22 -0.4
956,222 + CSW01_19135 0.22 -0.4
956,225 - CSW01_19135 0.23 +1.0
956,261 - CSW01_19135 0.31 +0.8
956,419 + CSW01_19135 0.65 -0.1
956,472 + CSW01_19135 0.77 +1.1
956,472 + CSW01_19135 0.77 +0.7
956,503 + CSW01_19135 0.83 +0.9
956,503 - CSW01_19135 0.83 -1.2
956,506 - CSW01_19135 0.84 +0.8
956,574 + -0.4
956,582 - +0.6
956,582 - -0.6
956,729 + CSW01_19140 0.12 -3.0
956,729 - CSW01_19140 0.12 +0.2
956,731 + CSW01_19140 0.13 -1.3
956,742 - CSW01_19140 0.15 -0.4
956,742 - CSW01_19140 0.15 +0.3
956,743 + CSW01_19140 0.16 +2.7
956,806 - CSW01_19140 0.30 +1.3
956,828 - CSW01_19140 0.35 -2.1
956,844 + CSW01_19140 0.39 +1.0
956,850 - CSW01_19140 0.40 +0.8
956,948 + CSW01_19140 0.62 -1.2
956,978 - CSW01_19140 0.69 +0.8
956,978 - CSW01_19140 0.69 -0.7
957,035 - CSW01_19140 0.82 -2.2
957,035 - CSW01_19140 0.82 +0.6
957,040 + CSW01_19140 0.83 +2.9
957,040 + CSW01_19140 0.83 +0.9
957,045 + CSW01_19140 0.84 -1.7
957,048 - CSW01_19140 0.85 -2.1
957,060 - CSW01_19140 0.88 -0.4
957,072 + +2.3
957,075 - +0.4
957,088 - -0.7
957,098 + -1.3
957,099 + -0.1
957,099 + +1.1
957,214 - +0.9
957,319 - -3.4
957,416 + +0.7
957,424 - -1.1
957,430 - +0.3
957,485 - CSW01_19145 0.12 -2.1
957,516 - CSW01_19145 0.15 -0.1
957,531 + CSW01_19145 0.16 -2.6

Or see this region's nucleotide sequence