Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19010

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19000 and CSW01_19005 are separated by 166 nucleotidesCSW01_19005 and CSW01_19010 are separated by 19 nucleotidesCSW01_19010 and CSW01_19015 are separated by 19 nucleotidesCSW01_19015 and CSW01_19020 are separated by 130 nucleotides CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589 _19005 CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157 _19015 CSW01_19020: CSW01_19020 - ABC transporter, at 927,288 to 928,031 _19020 Position (kb) 925 926 927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 924.714 kb on + strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.747 kb on + strandat 924.884 kb on - strandat 924.947 kb on + strand, within CSW01_19005at 925.130 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.185 kb on + strand, within CSW01_19005at 925.308 kb on - strand, within CSW01_19005at 925.390 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.430 kb on - strand, within CSW01_19005at 925.532 kb on - strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.561 kb on - strandat 925.563 kb on + strandat 925.563 kb on + strandat 925.571 kb on - strandat 925.571 kb on - strandat 925.613 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.630 kb on + strandat 925.630 kb on + strandat 925.696 kb on + strandat 925.696 kb on + strandat 925.704 kb on - strand, within CSW01_19010at 925.762 kb on + strand, within CSW01_19010at 925.891 kb on - strand, within CSW01_19010at 926.075 kb on + strand, within CSW01_19010at 926.213 kb on - strand, within CSW01_19010at 926.244 kb on - strand, within CSW01_19010at 926.308 kb on + strand, within CSW01_19010at 926.313 kb on + strand, within CSW01_19010at 926.316 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.395 kb on + strand, within CSW01_19010at 926.426 kb on - strandat 926.437 kb on - strandat 926.437 kb on - strandat 926.460 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.473 kb on - strandat 926.473 kb on - strandat 926.475 kb on + strandat 926.483 kb on - strandat 926.488 kb on + strandat 926.541 kb on - strandat 926.562 kb on - strandat 926.592 kb on + strand, within CSW01_19015at 926.634 kb on - strand, within CSW01_19015at 926.659 kb on - strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.864 kb on - strand, within CSW01_19015at 926.935 kb on + strand, within CSW01_19015at 926.977 kb on - strand, within CSW01_19015at 927.018 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.036 kb on - strand, within CSW01_19015at 927.147 kb on - strandat 927.147 kb on - strandat 927.173 kb on - strandat 927.219 kb on - strandat 927.223 kb on + strandat 927.412 kb on + strand, within CSW01_19020

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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924,714 + -0.1
924,722 - -1.0
924,722 - -0.8
924,722 - -0.2
924,747 + -0.9
924,884 - -1.2
924,947 + CSW01_19005 0.12 -0.4
925,130 + CSW01_19005 0.37 +0.0
925,184 + CSW01_19005 0.45 -2.9
925,184 + CSW01_19005 0.45 +2.0
925,185 + CSW01_19005 0.45 +1.6
925,308 - CSW01_19005 0.61 +1.7
925,390 + CSW01_19005 0.73 +0.6
925,422 + CSW01_19005 0.77 -2.5
925,422 + CSW01_19005 0.77 +0.6
925,422 + CSW01_19005 0.77 +0.0
925,422 + CSW01_19005 0.77 +0.2
925,430 - CSW01_19005 0.78 -0.2
925,532 - -0.3
925,553 + -0.5
925,553 + +1.3
925,553 + +0.1
925,553 + +0.9
925,553 + -2.4
925,553 + +1.3
925,553 + -1.4
925,561 - +0.7
925,563 + +0.2
925,563 + -3.5
925,571 - +0.7
925,571 - -0.4
925,613 + +0.7
925,621 - +0.7
925,621 - -1.7
925,621 - +2.1
925,621 - +0.4
925,630 + -2.2
925,630 + +1.4
925,696 + +0.1
925,696 + +1.2
925,704 - CSW01_19010 0.11 +0.1
925,762 + CSW01_19010 0.17 -2.1
925,891 - CSW01_19010 0.32 -2.0
926,075 + CSW01_19010 0.53 +2.0
926,213 - CSW01_19010 0.68 -1.7
926,244 - CSW01_19010 0.72 -0.8
926,308 + CSW01_19010 0.79 -3.4
926,313 + CSW01_19010 0.80 -2.1
926,316 - CSW01_19010 0.80 -3.8
926,321 - CSW01_19010 0.80 +0.1
926,321 - CSW01_19010 0.80 -1.6
926,395 + CSW01_19010 0.89 -2.5
926,426 - -0.5
926,437 - +0.8
926,437 - -4.1
926,460 + -0.2
926,465 + +0.2
926,465 + -1.8
926,465 + +0.5
926,465 + -2.6
926,473 - +0.8
926,473 - -0.0
926,475 + +1.2
926,483 - -1.7
926,488 + -0.4
926,541 - -0.3
926,562 - -1.4
926,592 + CSW01_19015 0.12 +1.4
926,634 - CSW01_19015 0.19 +0.5
926,659 - CSW01_19015 0.23 -0.4
926,768 + CSW01_19015 0.40 +0.6
926,768 + CSW01_19015 0.40 -1.2
926,864 - CSW01_19015 0.54 -2.9
926,935 + CSW01_19015 0.65 -1.1
926,977 - CSW01_19015 0.72 +0.4
927,018 - CSW01_19015 0.78 +1.5
927,026 - CSW01_19015 0.80 -2.0
927,026 - CSW01_19015 0.80 -0.9
927,036 - CSW01_19015 0.81 -0.1
927,147 - +1.1
927,147 - +0.4
927,173 - -0.1
927,219 - -2.0
927,223 + -0.2
927,412 + CSW01_19020 0.17 +0.6

Or see this region's nucleotide sequence