Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19000

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18990 and CSW01_18995 are separated by 203 nucleotidesCSW01_18995 and CSW01_19000 are separated by 28 nucleotidesCSW01_19000 and CSW01_19005 are separated by 166 nucleotidesCSW01_19005 and CSW01_19010 are separated by 19 nucleotides CSW01_18990: CSW01_18990 - ATP-dependent protease, at 919,985 to 922,345 _18990 CSW01_18995: CSW01_18995 - hypothetical protein, at 922,549 to 923,043 _18995 CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589 _19005 CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 Position (kb) 923 924 925Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 922.085 kb on + strand, within CSW01_18990at 922.085 kb on + strand, within CSW01_18990at 922.178 kb on + strandat 922.212 kb on - strandat 922.245 kb on - strandat 922.258 kb on + strandat 922.275 kb on + strandat 922.283 kb on - strandat 922.308 kb on + strandat 922.318 kb on + strandat 922.326 kb on - strandat 922.347 kb on + strandat 922.352 kb on + strandat 922.584 kb on + strandat 922.606 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.650 kb on + strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.665 kb on + strand, within CSW01_18995at 922.681 kb on - strand, within CSW01_18995at 922.692 kb on + strand, within CSW01_18995at 922.726 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.798 kb on - strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.863 kb on + strand, within CSW01_18995at 922.874 kb on + strand, within CSW01_18995at 922.927 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.938 kb on - strand, within CSW01_18995at 922.940 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 923.011 kb on + strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.024 kb on + strandat 923.168 kb on - strandat 923.211 kb on - strandat 923.279 kb on - strand, within CSW01_19000at 923.298 kb on + strand, within CSW01_19000at 923.305 kb on - strand, within CSW01_19000at 923.319 kb on - strand, within CSW01_19000at 923.374 kb on + strand, within CSW01_19000at 923.411 kb on - strand, within CSW01_19000at 923.509 kb on + strand, within CSW01_19000at 923.509 kb on + strand, within CSW01_19000at 923.613 kb on + strand, within CSW01_19000at 923.662 kb on - strand, within CSW01_19000at 923.666 kb on - strand, within CSW01_19000at 923.677 kb on + strand, within CSW01_19000at 923.729 kb on - strand, within CSW01_19000at 923.793 kb on + strand, within CSW01_19000at 923.801 kb on - strand, within CSW01_19000at 923.803 kb on + strand, within CSW01_19000at 923.819 kb on + strand, within CSW01_19000at 923.842 kb on + strand, within CSW01_19000at 923.963 kb on - strand, within CSW01_19000at 924.090 kb on - strand, within CSW01_19000at 924.118 kb on + strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.144 kb on + strand, within CSW01_19000at 924.157 kb on - strand, within CSW01_19000at 924.171 kb on - strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.276 kb on - strand, within CSW01_19000at 924.359 kb on + strand, within CSW01_19000at 924.427 kb on + strand, within CSW01_19000at 924.442 kb on + strand, within CSW01_19000at 924.512 kb on + strand, within CSW01_19000at 924.590 kb on + strandat 924.590 kb on + strandat 924.590 kb on + strandat 924.714 kb on + strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.747 kb on + strandat 924.884 kb on - strandat 924.947 kb on + strand, within CSW01_19005at 925.130 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.185 kb on + strand, within CSW01_19005at 925.308 kb on - strand, within CSW01_19005at 925.390 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.430 kb on - strand, within CSW01_19005at 925.532 kb on - strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.561 kb on - strandat 925.563 kb on + strandat 925.563 kb on + strandat 925.571 kb on - strandat 925.571 kb on - strandat 925.613 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.630 kb on + strandat 925.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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922,085 + CSW01_18990 0.89 +1.2
922,085 + CSW01_18990 0.89 -1.7
922,178 + +0.6
922,212 - +1.1
922,245 - +1.6
922,258 + -2.3
922,275 + -0.8
922,283 - -1.4
922,308 + +1.5
922,318 + -1.3
922,326 - +0.3
922,347 + -2.2
922,352 + +1.2
922,584 + -0.3
922,606 + CSW01_18995 0.12 +0.2
922,642 + CSW01_18995 0.19 +2.2
922,642 + CSW01_18995 0.19 -0.6
922,650 + CSW01_18995 0.20 -1.4
922,650 - CSW01_18995 0.20 +1.6
922,650 - CSW01_18995 0.20 -0.3
922,665 + CSW01_18995 0.23 -0.5
922,681 - CSW01_18995 0.27 +0.6
922,692 + CSW01_18995 0.29 -1.0
922,726 + CSW01_18995 0.36 -0.7
922,790 + CSW01_18995 0.49 +1.4
922,790 + CSW01_18995 0.49 -3.4
922,798 - CSW01_18995 0.50 -2.1
922,809 + CSW01_18995 0.53 +1.1
922,809 + CSW01_18995 0.53 +0.7
922,863 + CSW01_18995 0.63 -0.1
922,874 + CSW01_18995 0.66 +0.3
922,927 + CSW01_18995 0.76 -3.8
922,932 + CSW01_18995 0.77 +1.0
922,932 + CSW01_18995 0.77 -1.8
922,938 - CSW01_18995 0.79 +1.3
922,940 - CSW01_18995 0.79 -3.0
922,993 - CSW01_18995 0.90 +0.2
922,993 - CSW01_18995 0.90 +1.6
923,011 + +0.3
923,019 - -0.9
923,019 - +0.1
923,019 - +1.6
923,019 - -3.5
923,024 + +0.5
923,168 - -1.8
923,211 - +0.2
923,279 - CSW01_19000 0.13 -0.3
923,298 + CSW01_19000 0.14 -3.0
923,305 - CSW01_19000 0.14 +0.3
923,319 - CSW01_19000 0.15 -0.9
923,374 + CSW01_19000 0.19 +0.6
923,411 - CSW01_19000 0.21 -2.2
923,509 + CSW01_19000 0.27 +0.2
923,509 + CSW01_19000 0.27 +1.2
923,613 + CSW01_19000 0.33 +0.2
923,662 - CSW01_19000 0.36 -1.3
923,666 - CSW01_19000 0.37 -0.4
923,677 + CSW01_19000 0.37 -0.9
923,729 - CSW01_19000 0.41 -1.6
923,793 + CSW01_19000 0.45 -1.3
923,801 - CSW01_19000 0.45 +0.5
923,803 + CSW01_19000 0.45 -3.0
923,819 + CSW01_19000 0.46 -2.3
923,842 + CSW01_19000 0.48 -3.7
923,963 - CSW01_19000 0.55 -3.5
924,090 - CSW01_19000 0.63 -1.3
924,118 + CSW01_19000 0.65 -1.4
924,118 - CSW01_19000 0.65 +0.4
924,118 - CSW01_19000 0.65 +1.7
924,144 + CSW01_19000 0.66 -1.8
924,157 - CSW01_19000 0.67 -3.1
924,171 - CSW01_19000 0.68 -3.5
924,254 + CSW01_19000 0.73 +2.3
924,254 + CSW01_19000 0.73 -1.8
924,262 - CSW01_19000 0.73 -2.1
924,262 - CSW01_19000 0.73 -0.4
924,276 - CSW01_19000 0.74 +1.2
924,359 + CSW01_19000 0.79 +0.1
924,427 + CSW01_19000 0.84 +0.7
924,442 + CSW01_19000 0.85 -1.1
924,512 + CSW01_19000 0.89 -0.8
924,590 + +1.2
924,590 + -0.8
924,590 + -1.6
924,714 + -0.1
924,722 - -1.0
924,722 - -0.8
924,722 - -0.2
924,747 + -0.9
924,884 - -1.2
924,947 + CSW01_19005 0.12 -0.4
925,130 + CSW01_19005 0.37 +0.0
925,184 + CSW01_19005 0.45 -2.9
925,184 + CSW01_19005 0.45 +2.0
925,185 + CSW01_19005 0.45 +1.6
925,308 - CSW01_19005 0.61 +1.7
925,390 + CSW01_19005 0.73 +0.6
925,422 + CSW01_19005 0.77 -2.5
925,422 + CSW01_19005 0.77 +0.6
925,422 + CSW01_19005 0.77 +0.0
925,422 + CSW01_19005 0.77 +0.2
925,430 - CSW01_19005 0.78 -0.2
925,532 - -0.3
925,553 + -0.5
925,553 + +1.3
925,553 + +0.1
925,553 + +0.9
925,553 + -2.4
925,553 + +1.3
925,553 + -1.4
925,561 - +0.7
925,563 + +0.2
925,563 + -3.5
925,571 - +0.7
925,571 - -0.4
925,613 + +0.7
925,621 - +0.7
925,621 - -1.7
925,621 - +2.1
925,621 - +0.4
925,630 + -2.2
925,630 + +1.4

Or see this region's nucleotide sequence