Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18910

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18905 and CSW01_18910 are separated by 118 nucleotidesCSW01_18910 and CSW01_18915 are separated by 118 nucleotides CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026 _18905 CSW01_18910: CSW01_18910 - malate synthase, at 904,145 to 904,753 _18910 CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389 _18915 Position (kb) 904 905Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 903.316 kb on - strand, within CSW01_18905at 903.372 kb on - strand, within CSW01_18905at 903.438 kb on + strand, within CSW01_18905at 903.446 kb on - strand, within CSW01_18905at 903.494 kb on + strand, within CSW01_18905at 903.568 kb on + strand, within CSW01_18905at 903.609 kb on + strand, within CSW01_18905at 903.609 kb on + strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.617 kb on - strand, within CSW01_18905at 903.632 kb on + strand, within CSW01_18905at 903.664 kb on + strand, within CSW01_18905at 903.665 kb on - strand, within CSW01_18905at 903.741 kb on - strand, within CSW01_18905at 903.863 kb on + strand, within CSW01_18905at 903.900 kb on + strand, within CSW01_18905at 903.944 kb on + strandat 904.020 kb on + strandat 904.020 kb on + strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.082 kb on + strandat 904.090 kb on - strandat 904.090 kb on - strandat 904.184 kb on + strandat 904.194 kb on + strandat 904.194 kb on + strandat 904.229 kb on + strand, within CSW01_18910at 904.252 kb on + strand, within CSW01_18910at 904.260 kb on - strand, within CSW01_18910at 904.264 kb on + strand, within CSW01_18910at 904.283 kb on - strand, within CSW01_18910at 904.304 kb on + strand, within CSW01_18910at 904.351 kb on + strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.523 kb on + strand, within CSW01_18910at 904.726 kb on - strandat 904.978 kb on + strandat 904.998 kb on - strandat 905.285 kb on - strand, within CSW01_18915at 905.358 kb on - strand, within CSW01_18915at 905.400 kb on + strand, within CSW01_18915at 905.407 kb on + strand, within CSW01_18915at 905.429 kb on + strand, within CSW01_18915at 905.430 kb on - strand, within CSW01_18915at 905.443 kb on + strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.475 kb on - strand, within CSW01_18915at 905.578 kb on + strand, within CSW01_18915at 905.591 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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903,316 - CSW01_18905 0.30 -2.4
903,372 - CSW01_18905 0.36 +1.6
903,438 + CSW01_18905 0.42 +0.2
903,446 - CSW01_18905 0.43 -1.1
903,494 + CSW01_18905 0.48 -1.2
903,568 + CSW01_18905 0.55 -1.8
903,609 + CSW01_18905 0.59 -0.5
903,609 + CSW01_18905 0.59 -4.3
903,617 - CSW01_18905 0.60 -1.1
903,617 - CSW01_18905 0.60 +0.3
903,617 - CSW01_18905 0.60 +1.1
903,617 - CSW01_18905 0.60 +1.1
903,632 + CSW01_18905 0.61 -3.0
903,664 + CSW01_18905 0.64 +0.7
903,665 - CSW01_18905 0.65 -0.6
903,741 - CSW01_18905 0.72 -3.0
903,863 + CSW01_18905 0.84 -0.2
903,900 + CSW01_18905 0.88 -1.8
903,944 + -3.2
904,020 + -0.1
904,020 + +0.7
904,028 - -0.3
904,028 - +0.1
904,028 - +0.9
904,082 + -1.5
904,090 - +3.7
904,090 - +0.3
904,184 + +2.5
904,194 + -0.5
904,194 + +0.1
904,229 + CSW01_18910 0.14 +0.8
904,252 + CSW01_18910 0.18 +1.1
904,260 - CSW01_18910 0.19 -2.0
904,264 + CSW01_18910 0.20 -0.3
904,283 - CSW01_18910 0.23 +0.3
904,304 + CSW01_18910 0.26 -1.2
904,351 + CSW01_18910 0.34 +1.2
904,411 - CSW01_18910 0.44 +0.7
904,411 - CSW01_18910 0.44 -0.3
904,523 + CSW01_18910 0.62 +0.4
904,726 - +0.5
904,978 + -0.2
904,998 - -0.1
905,285 - CSW01_18915 0.27 -1.8
905,358 - CSW01_18915 0.32 +0.9
905,400 + CSW01_18915 0.35 +1.8
905,407 + CSW01_18915 0.35 +0.0
905,429 + CSW01_18915 0.37 -2.6
905,430 - CSW01_18915 0.37 -2.1
905,443 + CSW01_18915 0.38 -1.7
905,463 - CSW01_18915 0.39 -0.5
905,463 - CSW01_18915 0.39 -0.7
905,467 + CSW01_18915 0.39 -2.9
905,467 + CSW01_18915 0.39 +1.0
905,475 - CSW01_18915 0.40 +0.4
905,578 + CSW01_18915 0.47 +0.5
905,591 + CSW01_18915 0.47 -2.6
905,744 + CSW01_18915 0.57 -0.8
905,744 + CSW01_18915 0.57 -1.2
905,744 + CSW01_18915 0.57 -0.8
905,744 + CSW01_18915 0.57 +1.7
905,749 + CSW01_18915 0.58 +0.1
905,749 + CSW01_18915 0.58 +2.3
905,749 + CSW01_18915 0.58 +1.8
905,749 + CSW01_18915 0.58 -2.2
905,749 + CSW01_18915 0.58 -3.6
905,749 + CSW01_18915 0.58 +1.4
905,749 + CSW01_18915 0.58 +0.0

Or see this region's nucleotide sequence