Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18450

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18445 and CSW01_18450 are separated by 477 nucleotidesCSW01_18450 and CSW01_18455 are separated by 80 nucleotides CSW01_18445: CSW01_18445 - lysophospholipase VolA, at 811,316 to 813,706 _18445 CSW01_18450: CSW01_18450 - hypothetical protein, at 814,184 to 815,464 _18450 CSW01_18455: CSW01_18455 - hemagglutinin/proteinase, at 815,545 to 817,374 _18455 Position (kb) 814 815 816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 813.203 kb on - strand, within CSW01_18445at 813.300 kb on + strand, within CSW01_18445at 813.312 kb on + strand, within CSW01_18445at 813.320 kb on - strand, within CSW01_18445at 813.320 kb on - strand, within CSW01_18445at 813.332 kb on - strand, within CSW01_18445at 813.404 kb on + strand, within CSW01_18445at 813.447 kb on - strand, within CSW01_18445at 813.458 kb on - strand, within CSW01_18445at 813.473 kb on - strandat 813.520 kb on - strandat 813.540 kb on + strandat 813.550 kb on + strandat 813.558 kb on - strandat 813.754 kb on - strandat 813.773 kb on - strandat 813.798 kb on + strandat 813.806 kb on - strandat 813.806 kb on - strandat 813.928 kb on - strandat 813.991 kb on + strandat 814.025 kb on + strandat 814.030 kb on + strandat 814.146 kb on + strandat 814.213 kb on + strandat 814.231 kb on + strandat 814.239 kb on - strandat 814.246 kb on + strandat 814.254 kb on - strandat 814.254 kb on - strandat 814.254 kb on - strandat 814.268 kb on - strandat 814.346 kb on - strand, within CSW01_18450at 814.388 kb on - strand, within CSW01_18450at 814.398 kb on - strand, within CSW01_18450at 814.398 kb on - strand, within CSW01_18450at 814.425 kb on + strand, within CSW01_18450at 814.492 kb on - strand, within CSW01_18450at 814.688 kb on + strand, within CSW01_18450at 814.719 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.858 kb on - strand, within CSW01_18450at 814.864 kb on - strand, within CSW01_18450at 814.877 kb on + strand, within CSW01_18450at 814.921 kb on + strand, within CSW01_18450at 814.926 kb on + strand, within CSW01_18450at 814.941 kb on - strand, within CSW01_18450at 815.098 kb on + strand, within CSW01_18450at 815.285 kb on - strand, within CSW01_18450at 815.413 kb on + strandat 815.501 kb on + strandat 815.501 kb on + strandat 815.509 kb on - strandat 815.626 kb on + strandat 815.745 kb on + strand, within CSW01_18455at 815.745 kb on + strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.769 kb on + strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.793 kb on + strand, within CSW01_18455at 815.806 kb on + strand, within CSW01_18455at 815.814 kb on - strand, within CSW01_18455at 815.926 kb on - strand, within CSW01_18455at 815.942 kb on + strand, within CSW01_18455at 816.018 kb on + strand, within CSW01_18455at 816.086 kb on + strand, within CSW01_18455at 816.102 kb on + strand, within CSW01_18455at 816.110 kb on - strand, within CSW01_18455at 816.110 kb on - strand, within CSW01_18455at 816.113 kb on + strand, within CSW01_18455at 816.121 kb on - strand, within CSW01_18455at 816.121 kb on - strand, within CSW01_18455at 816.175 kb on - strand, within CSW01_18455at 816.187 kb on - strand, within CSW01_18455at 816.240 kb on + strand, within CSW01_18455at 816.289 kb on + strand, within CSW01_18455at 816.332 kb on - strand, within CSW01_18455

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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813,203 - CSW01_18445 0.79 +1.1
813,300 + CSW01_18445 0.83 -0.1
813,312 + CSW01_18445 0.83 -0.0
813,320 - CSW01_18445 0.84 -0.5
813,320 - CSW01_18445 0.84 -1.0
813,332 - CSW01_18445 0.84 -1.0
813,404 + CSW01_18445 0.87 -2.8
813,447 - CSW01_18445 0.89 -1.0
813,458 - CSW01_18445 0.90 -0.5
813,473 - +0.0
813,520 - -3.7
813,540 + -0.5
813,550 + +1.8
813,558 - -2.9
813,754 - -0.9
813,773 - -2.9
813,798 + +1.1
813,806 - -0.8
813,806 - +0.2
813,928 - -0.1
813,991 + -2.3
814,025 + +1.0
814,030 + +0.9
814,146 + +1.6
814,213 + -2.6
814,231 + -1.1
814,239 - -0.3
814,246 + -1.1
814,254 - +0.6
814,254 - +0.1
814,254 - -1.8
814,268 - +0.6
814,346 - CSW01_18450 0.13 -2.5
814,388 - CSW01_18450 0.16 +2.8
814,398 - CSW01_18450 0.17 -0.9
814,398 - CSW01_18450 0.17 +0.5
814,425 + CSW01_18450 0.19 -0.0
814,492 - CSW01_18450 0.24 -3.4
814,688 + CSW01_18450 0.39 -0.2
814,719 - CSW01_18450 0.42 -2.0
814,806 - CSW01_18450 0.49 +0.6
814,806 - CSW01_18450 0.49 +1.5
814,806 - CSW01_18450 0.49 +0.6
814,806 - CSW01_18450 0.49 +0.6
814,858 - CSW01_18450 0.53 +1.2
814,864 - CSW01_18450 0.53 -0.1
814,877 + CSW01_18450 0.54 -0.7
814,921 + CSW01_18450 0.58 +0.6
814,926 + CSW01_18450 0.58 +1.1
814,941 - CSW01_18450 0.59 -4.2
815,098 + CSW01_18450 0.71 -2.7
815,285 - CSW01_18450 0.86 -3.2
815,413 + -0.9
815,501 + -0.8
815,501 + -1.0
815,509 - +1.9
815,626 + -1.5
815,745 + CSW01_18455 0.11 +2.4
815,745 + CSW01_18455 0.11 -0.4
815,753 - CSW01_18455 0.11 +0.8
815,753 - CSW01_18455 0.11 -2.0
815,753 - CSW01_18455 0.11 +0.5
815,769 + CSW01_18455 0.12 -0.2
815,777 - CSW01_18455 0.13 +0.2
815,777 - CSW01_18455 0.13 +0.7
815,777 - CSW01_18455 0.13 +0.4
815,793 + CSW01_18455 0.14 +0.9
815,806 + CSW01_18455 0.14 -0.1
815,814 - CSW01_18455 0.15 -1.8
815,926 - CSW01_18455 0.21 +1.2
815,942 + CSW01_18455 0.22 +0.6
816,018 + CSW01_18455 0.26 +0.8
816,086 + CSW01_18455 0.30 +1.1
816,102 + CSW01_18455 0.30 -3.2
816,110 - CSW01_18455 0.31 -1.2
816,110 - CSW01_18455 0.31 +0.7
816,113 + CSW01_18455 0.31 -1.7
816,121 - CSW01_18455 0.31 +0.7
816,121 - CSW01_18455 0.31 -0.1
816,175 - CSW01_18455 0.34 -3.4
816,187 - CSW01_18455 0.35 +1.2
816,240 + CSW01_18455 0.38 -2.0
816,289 + CSW01_18455 0.41 -1.9
816,332 - CSW01_18455 0.43 +0.7

Or see this region's nucleotide sequence