Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18400

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18395 and CSW01_18400 are separated by 4 nucleotidesCSW01_18400 and CSW01_18405 overlap by 8 nucleotides CSW01_18395: CSW01_18395 - hypothetical protein, at 801,332 to 802,576 _18395 CSW01_18400: CSW01_18400 - outer membrane lipoprotein-sorting protein, at 802,581 to 803,324 _18400 CSW01_18405: CSW01_18405 - ABC transporter permease, at 803,317 to 804,576 _18405 Position (kb) 802 803 804Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 801.582 kb on - strand, within CSW01_18395at 801.605 kb on + strand, within CSW01_18395at 801.626 kb on + strand, within CSW01_18395at 801.634 kb on - strand, within CSW01_18395at 801.659 kb on + strand, within CSW01_18395at 801.722 kb on + strand, within CSW01_18395at 801.737 kb on + strand, within CSW01_18395at 801.751 kb on + strand, within CSW01_18395at 801.769 kb on - strand, within CSW01_18395at 801.776 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.910 kb on - strand, within CSW01_18395at 801.929 kb on + strand, within CSW01_18395at 801.944 kb on - strand, within CSW01_18395at 802.006 kb on + strand, within CSW01_18395at 802.009 kb on - strand, within CSW01_18395at 802.060 kb on + strand, within CSW01_18395at 802.095 kb on + strand, within CSW01_18395at 802.126 kb on + strand, within CSW01_18395at 802.158 kb on + strand, within CSW01_18395at 802.199 kb on + strand, within CSW01_18395at 802.206 kb on - strand, within CSW01_18395at 802.244 kb on + strand, within CSW01_18395at 802.278 kb on + strand, within CSW01_18395at 802.337 kb on - strand, within CSW01_18395at 802.344 kb on + strand, within CSW01_18395at 802.362 kb on - strand, within CSW01_18395at 802.368 kb on + strand, within CSW01_18395at 802.528 kb on + strandat 802.535 kb on + strandat 802.541 kb on - strandat 802.571 kb on + strandat 802.579 kb on - strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.647 kb on - strandat 802.647 kb on - strandat 802.747 kb on + strand, within CSW01_18400at 802.747 kb on + strand, within CSW01_18400at 802.778 kb on + strand, within CSW01_18400at 802.807 kb on + strand, within CSW01_18400at 802.814 kb on + strand, within CSW01_18400at 802.822 kb on - strand, within CSW01_18400at 802.829 kb on + strand, within CSW01_18400at 802.887 kb on + strand, within CSW01_18400at 802.928 kb on - strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 803.011 kb on - strand, within CSW01_18400at 803.012 kb on + strand, within CSW01_18400at 803.092 kb on + strand, within CSW01_18400at 803.191 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.250 kb on - strandat 803.252 kb on + strandat 803.252 kb on + strandat 803.264 kb on - strandat 803.293 kb on - strandat 803.293 kb on - strandat 803.366 kb on + strandat 803.377 kb on - strandat 803.379 kb on - strandat 803.392 kb on + strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.402 kb on + strandat 803.405 kb on - strandat 803.417 kb on + strandat 803.493 kb on - strand, within CSW01_18405at 803.539 kb on + strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.547 kb on - strand, within CSW01_18405at 803.549 kb on + strand, within CSW01_18405at 803.638 kb on - strand, within CSW01_18405at 803.671 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.809 kb on + strand, within CSW01_18405at 803.847 kb on - strand, within CSW01_18405at 803.855 kb on + strand, within CSW01_18405at 803.864 kb on + strand, within CSW01_18405at 803.896 kb on - strand, within CSW01_18405at 803.911 kb on - strand, within CSW01_18405at 803.913 kb on + strand, within CSW01_18405at 804.026 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.162 kb on + strand, within CSW01_18405at 804.239 kb on + strand, within CSW01_18405at 804.257 kb on - strand, within CSW01_18405

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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801,582 - CSW01_18395 0.20 +1.2
801,605 + CSW01_18395 0.22 +0.4
801,626 + CSW01_18395 0.24 +0.6
801,634 - CSW01_18395 0.24 -2.4
801,659 + CSW01_18395 0.26 +0.8
801,722 + CSW01_18395 0.31 -0.5
801,737 + CSW01_18395 0.33 -0.7
801,751 + CSW01_18395 0.34 -1.1
801,769 - CSW01_18395 0.35 -2.1
801,776 + CSW01_18395 0.36 -3.4
801,874 + CSW01_18395 0.44 +0.1
801,874 + CSW01_18395 0.44 +0.9
801,884 + CSW01_18395 0.44 -1.1
801,884 + CSW01_18395 0.44 -1.9
801,910 - CSW01_18395 0.46 -0.0
801,929 + CSW01_18395 0.48 -0.7
801,944 - CSW01_18395 0.49 +1.8
802,006 + CSW01_18395 0.54 +0.1
802,009 - CSW01_18395 0.54 +2.1
802,060 + CSW01_18395 0.58 +0.8
802,095 + CSW01_18395 0.61 +0.9
802,126 + CSW01_18395 0.64 -3.1
802,158 + CSW01_18395 0.66 +1.4
802,199 + CSW01_18395 0.70 +0.1
802,206 - CSW01_18395 0.70 +0.1
802,244 + CSW01_18395 0.73 -1.8
802,278 + CSW01_18395 0.76 -1.5
802,337 - CSW01_18395 0.81 -0.6
802,344 + CSW01_18395 0.81 +1.0
802,362 - CSW01_18395 0.83 +0.4
802,368 + CSW01_18395 0.83 +0.4
802,528 + -0.2
802,535 + +0.7
802,541 - -1.0
802,571 + -4.8
802,579 - +0.7
802,639 + -1.5
802,639 + -2.6
802,639 + +0.5
802,647 - +0.7
802,647 - -0.3
802,747 + CSW01_18400 0.22 -0.1
802,747 + CSW01_18400 0.22 -2.0
802,778 + CSW01_18400 0.26 +0.9
802,807 + CSW01_18400 0.30 +1.6
802,814 + CSW01_18400 0.31 -0.3
802,822 - CSW01_18400 0.32 -3.7
802,829 + CSW01_18400 0.33 -3.3
802,887 + CSW01_18400 0.41 +1.1
802,928 - CSW01_18400 0.47 +1.0
802,945 + CSW01_18400 0.49 -2.6
802,945 + CSW01_18400 0.49 +0.2
802,953 - CSW01_18400 0.50 -2.1
802,953 - CSW01_18400 0.50 +0.4
803,011 - CSW01_18400 0.58 -1.3
803,012 + CSW01_18400 0.58 +1.8
803,092 + CSW01_18400 0.69 -1.2
803,191 - CSW01_18400 0.82 +1.6
803,245 - CSW01_18400 0.89 +2.2
803,245 - CSW01_18400 0.89 +0.2
803,250 - -1.3
803,252 + -0.1
803,252 + -3.8
803,264 - -1.1
803,293 - -3.4
803,293 - -0.4
803,366 + -0.3
803,377 - +0.8
803,379 - -0.3
803,392 + -0.3
803,400 - +1.4
803,400 - +0.9
803,400 - +0.6
803,400 - +1.0
803,402 + +0.6
803,405 - -0.6
803,417 + -0.2
803,493 - CSW01_18405 0.14 -1.0
803,539 + CSW01_18405 0.18 -2.7
803,545 - CSW01_18405 0.18 -1.6
803,545 - CSW01_18405 0.18 +0.4
803,547 - CSW01_18405 0.18 -3.1
803,549 + CSW01_18405 0.18 -1.4
803,638 - CSW01_18405 0.25 -0.4
803,671 + CSW01_18405 0.28 +0.1
803,672 + CSW01_18405 0.28 +0.3
803,672 + CSW01_18405 0.28 -3.1
803,672 + CSW01_18405 0.28 -2.7
803,672 + CSW01_18405 0.28 -2.3
803,672 + CSW01_18405 0.28 -0.8
803,680 - CSW01_18405 0.29 +1.1
803,680 - CSW01_18405 0.29 -1.1
803,680 - CSW01_18405 0.29 +2.2
803,680 - CSW01_18405 0.29 -0.7
803,680 - CSW01_18405 0.29 +2.8
803,680 - CSW01_18405 0.29 -1.1
803,680 - CSW01_18405 0.29 -1.9
803,809 + CSW01_18405 0.39 -2.1
803,847 - CSW01_18405 0.42 -2.1
803,855 + CSW01_18405 0.43 +0.4
803,864 + CSW01_18405 0.43 -1.6
803,896 - CSW01_18405 0.46 +0.3
803,911 - CSW01_18405 0.47 -1.6
803,913 + CSW01_18405 0.47 +0.5
804,026 + CSW01_18405 0.56 +0.0
804,063 + CSW01_18405 0.59 +1.4
804,063 + CSW01_18405 0.59 +0.0
804,063 + CSW01_18405 0.59 -0.4
804,063 + CSW01_18405 0.59 +0.1
804,063 + CSW01_18405 0.59 +1.1
804,071 - CSW01_18405 0.60 -2.1
804,071 - CSW01_18405 0.60 +1.3
804,071 - CSW01_18405 0.60 +1.5
804,071 - CSW01_18405 0.60 -3.6
804,145 + CSW01_18405 0.66 +0.8
804,145 + CSW01_18405 0.66 -0.9
804,145 + CSW01_18405 0.66 -0.9
804,162 + CSW01_18405 0.67 -2.9
804,239 + CSW01_18405 0.73 +1.0
804,257 - CSW01_18405 0.75 -2.1

Or see this region's nucleotide sequence