Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18355 and CSW01_18360 are separated by 300 nucleotides CSW01_18360 and CSW01_18365 are separated by 48 nucleotides CSW01_18365 and CSW01_18370 are separated by 185 nucleotides
CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443
_18355
CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968
_18360
CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631
_18365
CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061
_18370
Position (kb) 785
786 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 784.774 kb on - strand, within CSW01_18355 at 784.783 kb on + strand, within CSW01_18355 at 784.783 kb on + strand, within CSW01_18355 at 784.791 kb on - strand, within CSW01_18355 at 784.791 kb on - strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.934 kb on - strand, within CSW01_18355 at 784.994 kb on + strand, within CSW01_18355 at 785.025 kb on + strand, within CSW01_18355 at 785.033 kb on - strand, within CSW01_18355 at 785.121 kb on + strand, within CSW01_18355 at 785.164 kb on + strand, within CSW01_18355 at 785.164 kb on + strand, within CSW01_18355 at 785.175 kb on + strand, within CSW01_18355 at 785.317 kb on - strand at 785.384 kb on + strand at 785.384 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.407 kb on - strand at 785.412 kb on - strand at 785.424 kb on - strand at 785.452 kb on + strand at 785.460 kb on - strand at 785.462 kb on + strand at 785.490 kb on - strand at 785.492 kb on - strand at 785.537 kb on + strand at 785.578 kb on + strand at 785.578 kb on + strand at 785.586 kb on - strand at 785.718 kb on - strand at 785.763 kb on + strand at 785.770 kb on - strand, within CSW01_18360 at 785.786 kb on - strand, within CSW01_18360 at 785.793 kb on + strand, within CSW01_18360 at 785.984 kb on + strand at 785.991 kb on - strand at 785.991 kb on - strand at 785.995 kb on + strand at 786.003 kb on - strand at 786.003 kb on - strand at 786.014 kb on + strand at 786.014 kb on + strand at 786.022 kb on - strand at 786.060 kb on + strand at 786.131 kb on - strand, within CSW01_18365 at 786.240 kb on + strand, within CSW01_18365 at 786.301 kb on + strand, within CSW01_18365 at 786.411 kb on + strand, within CSW01_18365 at 786.419 kb on + strand, within CSW01_18365 at 786.464 kb on + strand, within CSW01_18365 at 786.566 kb on - strand, within CSW01_18365 at 786.884 kb on + strand at 786.944 kb on + strand, within CSW01_18370
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 784,774 - CSW01_18355 0.56 +0.5 784,783 + CSW01_18355 0.57 +0.5 784,783 + CSW01_18355 0.57 +1.0 784,791 - CSW01_18355 0.57 +2.7 784,791 - CSW01_18355 0.57 +0.7 784,926 + CSW01_18355 0.66 +0.3 784,926 + CSW01_18355 0.66 +0.4 784,926 + CSW01_18355 0.66 -0.9 784,926 + CSW01_18355 0.66 -0.1 784,934 - CSW01_18355 0.67 +0.0 784,994 + CSW01_18355 0.71 -0.1 785,025 + CSW01_18355 0.73 +0.1 785,033 - CSW01_18355 0.73 -1.7 785,121 + CSW01_18355 0.79 +0.7 785,164 + CSW01_18355 0.82 +0.6 785,164 + CSW01_18355 0.82 -1.9 785,175 + CSW01_18355 0.82 +0.3 785,317 - +1.1 785,384 + +0.7 785,384 + +1.5 785,404 + -4.4 785,404 + -2.3 785,404 + +0.5 785,404 + -1.6 785,407 - +1.2 785,412 - +1.1 785,424 - +1.0 785,452 + -0.9 785,460 - +0.7 785,462 + -0.1 785,490 - +0.4 785,492 - +2.1 785,537 + +0.8 785,578 + -0.2 785,578 + -1.2 785,586 - +0.5 785,718 - -2.7 785,763 + -0.0 785,770 - CSW01_18360 0.12 -0.5 785,786 - CSW01_18360 0.19 +1.0 785,793 + CSW01_18360 0.22 +0.9 785,984 + -0.2 785,991 - -0.2 785,991 - +3.8 785,995 + -0.3 786,003 - +1.3 786,003 - -0.5 786,014 + +1.4 786,014 + -2.8 786,022 - -0.3 786,060 + -1.5 786,131 - CSW01_18365 0.19 +0.6 786,240 + CSW01_18365 0.36 +0.8 786,301 + CSW01_18365 0.46 -1.2 786,411 + CSW01_18365 0.64 -0.9 786,419 + CSW01_18365 0.65 -1.6 786,464 + CSW01_18365 0.73 +0.2 786,566 - CSW01_18365 0.89 +0.3 786,884 + -0.6 786,944 + CSW01_18370 0.10 -0.8
Or see this region's nucleotide sequence