Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18280 and CSW01_18285 are separated by 700 nucleotides CSW01_18285 and CSW01_18290 overlap by 11 nucleotides
CSW01_18280: CSW01_18280 - L-2,4-diaminobutyric acid acetyltransferase, at 769,398 to 769,919
_18280
CSW01_18285: CSW01_18285 - 4a-hydroxytetrahydrobiopterin dehydratase, at 770,620 to 770,949
_18285
CSW01_18290: CSW01_18290 - phenylalanine 4-monooxygenase, at 770,939 to 771,733
_18290
Position (kb) 770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 769.626 kb on + strand, within CSW01_18280 at 769.626 kb on + strand, within CSW01_18280 at 769.626 kb on + strand, within CSW01_18280 at 769.633 kb on + strand, within CSW01_18280 at 769.633 kb on + strand, within CSW01_18280 at 769.634 kb on - strand, within CSW01_18280 at 769.658 kb on - strand, within CSW01_18280 at 769.876 kb on + strand at 769.876 kb on + strand at 769.894 kb on - strand at 770.191 kb on + strand at 770.312 kb on - strand at 770.598 kb on + strand at 770.789 kb on + strand, within CSW01_18285 at 770.834 kb on - strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 770.910 kb on + strand, within CSW01_18285 at 771.016 kb on - strand at 771.026 kb on + strand, within CSW01_18290 at 771.037 kb on + strand, within CSW01_18290 at 771.044 kb on - strand, within CSW01_18290 at 771.050 kb on + strand, within CSW01_18290 at 771.091 kb on - strand, within CSW01_18290 at 771.105 kb on - strand, within CSW01_18290 at 771.140 kb on - strand, within CSW01_18290 at 771.247 kb on + strand, within CSW01_18290 at 771.255 kb on - strand, within CSW01_18290 at 771.347 kb on + strand, within CSW01_18290 at 771.347 kb on + strand, within CSW01_18290 at 771.365 kb on + strand, within CSW01_18290 at 771.373 kb on - strand, within CSW01_18290 at 771.422 kb on - strand, within CSW01_18290 at 771.422 kb on - strand, within CSW01_18290 at 771.645 kb on + strand, within CSW01_18290 at 771.672 kb on - strand at 771.707 kb on + strand at 771.770 kb on + strand at 771.770 kb on + strand at 771.778 kb on - strand at 771.778 kb on - strand at 771.870 kb on + strand at 771.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 769,626 + CSW01_18280 0.44 -1.7 769,626 + CSW01_18280 0.44 -1.9 769,626 + CSW01_18280 0.44 -0.5 769,633 + CSW01_18280 0.45 +0.6 769,633 + CSW01_18280 0.45 -1.5 769,634 - CSW01_18280 0.45 -3.2 769,658 - CSW01_18280 0.50 +0.9 769,876 + -0.5 769,876 + -2.7 769,894 - +1.0 770,191 + +1.4 770,312 - -3.0 770,598 + -1.7 770,789 + CSW01_18285 0.51 +2.3 770,834 - CSW01_18285 0.65 +0.9 770,910 + CSW01_18285 0.88 +1.9 770,910 + CSW01_18285 0.88 -0.6 770,910 + CSW01_18285 0.88 +1.0 770,910 + CSW01_18285 0.88 +2.5 771,016 - +1.6 771,026 + CSW01_18290 0.11 -3.4 771,037 + CSW01_18290 0.12 -0.1 771,044 - CSW01_18290 0.13 -2.3 771,050 + CSW01_18290 0.14 -2.6 771,091 - CSW01_18290 0.19 +0.8 771,105 - CSW01_18290 0.21 -2.1 771,140 - CSW01_18290 0.25 +1.1 771,247 + CSW01_18290 0.39 -1.9 771,255 - CSW01_18290 0.40 +2.4 771,347 + CSW01_18290 0.51 -3.1 771,347 + CSW01_18290 0.51 +0.9 771,365 + CSW01_18290 0.54 +0.8 771,373 - CSW01_18290 0.55 +1.3 771,422 - CSW01_18290 0.61 +0.7 771,422 - CSW01_18290 0.61 -4.4 771,645 + CSW01_18290 0.89 +0.0 771,672 - +0.6 771,707 + +1.7 771,770 + +1.1 771,770 + -1.7 771,778 - -2.9 771,778 - -0.2 771,870 + +1.1 771,871 + +0.1
Or see this region's nucleotide sequence