Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18240

Experiment: ICP3_phage_4.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18235 and CSW01_18240 are separated by 368 nucleotidesCSW01_18240 and CSW01_18245 are separated by 2 nucleotides CSW01_18235: CSW01_18235 - arginine decarboxylase, at 759,537 to 761,501 _18235 CSW01_18240: CSW01_18240 - mechanosensitive ion channel protein, at 761,870 to 762,454 _18240 CSW01_18245: CSW01_18245 - magnesium transporter MgtE, at 762,457 to 763,820 _18245 Position (kb) 761 762 763Strain fitness (log2 ratio) -3 -2 -1 0 1at 760.894 kb on + strand, within CSW01_18235at 760.904 kb on + strand, within CSW01_18235at 760.969 kb on + strand, within CSW01_18235at 760.971 kb on + strand, within CSW01_18235at 761.066 kb on + strand, within CSW01_18235at 761.066 kb on + strand, within CSW01_18235at 761.074 kb on - strand, within CSW01_18235at 761.160 kb on - strand, within CSW01_18235at 761.315 kb on - strandat 761.402 kb on + strandat 761.457 kb on + strandat 761.499 kb on - strandat 761.510 kb on + strandat 761.539 kb on + strandat 761.686 kb on - strandat 761.760 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.768 kb on + strandat 761.771 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.956 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 762.053 kb on + strand, within CSW01_18240at 762.118 kb on + strand, within CSW01_18240at 762.120 kb on + strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.135 kb on + strand, within CSW01_18240at 762.185 kb on + strand, within CSW01_18240at 762.188 kb on - strand, within CSW01_18240at 762.198 kb on - strand, within CSW01_18240at 762.291 kb on - strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.335 kb on - strand, within CSW01_18240at 762.439 kb on + strandat 762.447 kb on - strandat 762.447 kb on - strandat 762.562 kb on - strandat 762.642 kb on - strand, within CSW01_18245at 762.658 kb on + strand, within CSW01_18245at 762.751 kb on - strand, within CSW01_18245at 762.752 kb on - strand, within CSW01_18245at 762.781 kb on + strand, within CSW01_18245at 762.796 kb on + strand, within CSW01_18245at 762.897 kb on - strand, within CSW01_18245at 762.949 kb on + strand, within CSW01_18245at 762.968 kb on + strand, within CSW01_18245at 763.088 kb on + strand, within CSW01_18245at 763.093 kb on + strand, within CSW01_18245at 763.096 kb on - strand, within CSW01_18245at 763.234 kb on + strand, within CSW01_18245at 763.275 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.330 kb on - strand, within CSW01_18245at 763.398 kb on - strand, within CSW01_18245at 763.454 kb on + strand, within CSW01_18245

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2
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760,894 + CSW01_18235 0.69 +0.6
760,904 + CSW01_18235 0.70 -2.8
760,969 + CSW01_18235 0.73 +0.3
760,971 + CSW01_18235 0.73 -1.8
761,066 + CSW01_18235 0.78 +0.8
761,066 + CSW01_18235 0.78 +0.6
761,074 - CSW01_18235 0.78 +0.2
761,160 - CSW01_18235 0.83 -0.8
761,315 - -0.9
761,402 + +1.1
761,457 + +0.1
761,499 - +0.9
761,510 + +0.2
761,539 + -3.2
761,686 - -1.1
761,760 + -0.1
761,763 + +1.3
761,763 + +1.1
761,763 + +0.1
761,763 + +0.5
761,768 + -1.1
761,771 - -0.1
761,781 - +0.3
761,781 - -1.2
761,781 - -3.0
761,956 + CSW01_18240 0.15 -1.7
761,982 + CSW01_18240 0.19 -1.5
761,982 + CSW01_18240 0.19 +1.0
761,982 + CSW01_18240 0.19 -0.9
761,982 + CSW01_18240 0.19 -0.3
761,982 + CSW01_18240 0.19 +1.0
761,982 + CSW01_18240 0.19 -1.8
761,989 - CSW01_18240 0.20 -0.2
761,989 - CSW01_18240 0.20 -1.6
761,989 - CSW01_18240 0.20 -0.2
761,990 - CSW01_18240 0.21 -0.2
761,990 - CSW01_18240 0.21 -0.1
761,990 - CSW01_18240 0.21 -2.3
761,990 - CSW01_18240 0.21 -1.7
761,990 - CSW01_18240 0.21 -1.5
761,990 - CSW01_18240 0.21 -0.9
761,990 - CSW01_18240 0.21 -3.2
761,990 - CSW01_18240 0.21 +0.9
761,990 - CSW01_18240 0.21 -2.1
762,053 + CSW01_18240 0.31 -0.3
762,118 + CSW01_18240 0.42 -3.0
762,120 + CSW01_18240 0.43 -2.3
762,128 - CSW01_18240 0.44 -1.6
762,128 - CSW01_18240 0.44 -0.6
762,135 + CSW01_18240 0.45 +1.6
762,185 + CSW01_18240 0.54 -1.4
762,188 - CSW01_18240 0.54 +0.5
762,198 - CSW01_18240 0.56 +0.0
762,291 - CSW01_18240 0.72 +0.1
762,327 + CSW01_18240 0.78 -2.1
762,327 + CSW01_18240 0.78 +1.3
762,327 + CSW01_18240 0.78 -1.0
762,335 - CSW01_18240 0.79 -0.0
762,439 + +1.2
762,447 - -0.1
762,447 - -0.4
762,562 - -0.6
762,642 - CSW01_18245 0.14 -2.7
762,658 + CSW01_18245 0.15 -0.1
762,751 - CSW01_18245 0.22 +0.8
762,752 - CSW01_18245 0.22 +0.6
762,781 + CSW01_18245 0.24 -0.8
762,796 + CSW01_18245 0.25 -0.3
762,897 - CSW01_18245 0.32 -0.2
762,949 + CSW01_18245 0.36 +1.4
762,968 + CSW01_18245 0.37 -0.7
763,088 + CSW01_18245 0.46 -2.6
763,093 + CSW01_18245 0.47 -0.1
763,096 - CSW01_18245 0.47 -0.0
763,234 + CSW01_18245 0.57 -2.3
763,275 + CSW01_18245 0.60 +1.5
763,322 + CSW01_18245 0.63 -3.0
763,322 + CSW01_18245 0.63 -1.8
763,322 + CSW01_18245 0.63 -0.8
763,322 + CSW01_18245 0.63 -0.2
763,322 + CSW01_18245 0.63 -1.2
763,322 + CSW01_18245 0.63 -1.6
763,330 - CSW01_18245 0.64 -2.7
763,398 - CSW01_18245 0.69 -1.5
763,454 + CSW01_18245 0.73 -0.3

Or see this region's nucleotide sequence