Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18200 and CSW01_18205 are separated by 145 nucleotides CSW01_18205 and CSW01_18210 are separated by 273 nucleotides
CSW01_18200: CSW01_18200 - ABC transporter substrate-binding protein, at 749,672 to 750,508
_18200
CSW01_18205: CSW01_18205 - dehydratase, at 750,654 to 751,346
_18205
CSW01_18210: CSW01_18210 - cryptochrome/photolyase family protein, at 751,620 to 753,170
_18210
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.740 kb on - strand at 749.955 kb on + strand, within CSW01_18200 at 749.955 kb on + strand, within CSW01_18200 at 749.955 kb on + strand, within CSW01_18200 at 749.963 kb on - strand, within CSW01_18200 at 750.006 kb on - strand, within CSW01_18200 at 750.006 kb on - strand, within CSW01_18200 at 750.039 kb on - strand, within CSW01_18200 at 750.039 kb on - strand, within CSW01_18200 at 750.079 kb on - strand, within CSW01_18200 at 750.350 kb on + strand, within CSW01_18200 at 750.418 kb on - strand, within CSW01_18200 at 750.503 kb on - strand at 750.563 kb on - strand at 750.574 kb on + strand at 750.574 kb on + strand at 750.598 kb on + strand at 750.630 kb on + strand at 750.630 kb on + strand at 750.652 kb on + strand at 750.736 kb on + strand, within CSW01_18205 at 751.096 kb on + strand, within CSW01_18205 at 751.098 kb on + strand, within CSW01_18205 at 751.141 kb on + strand, within CSW01_18205 at 751.203 kb on + strand, within CSW01_18205 at 751.246 kb on + strand, within CSW01_18205 at 751.260 kb on - strand, within CSW01_18205 at 751.267 kb on + strand, within CSW01_18205 at 751.421 kb on - strand at 751.530 kb on + strand at 751.565 kb on + strand at 751.573 kb on - strand at 751.573 kb on - strand at 751.681 kb on - strand at 751.698 kb on - strand at 751.757 kb on + strand at 751.791 kb on + strand, within CSW01_18210 at 751.804 kb on + strand, within CSW01_18210 at 751.834 kb on + strand, within CSW01_18210 at 751.884 kb on - strand, within CSW01_18210 at 751.916 kb on + strand, within CSW01_18210 at 751.992 kb on - strand, within CSW01_18210 at 751.997 kb on - strand, within CSW01_18210 at 751.999 kb on + strand, within CSW01_18210 at 752.007 kb on - strand, within CSW01_18210 at 752.195 kb on + strand, within CSW01_18210 at 752.271 kb on + strand, within CSW01_18210 at 752.271 kb on + strand, within CSW01_18210 at 752.271 kb on + strand, within CSW01_18210 at 752.271 kb on + strand, within CSW01_18210 at 752.279 kb on - strand, within CSW01_18210 at 752.279 kb on - strand, within CSW01_18210
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 749,740 - +0.2 749,955 + CSW01_18200 0.34 -0.8 749,955 + CSW01_18200 0.34 -2.6 749,955 + CSW01_18200 0.34 +0.6 749,963 - CSW01_18200 0.35 -1.9 750,006 - CSW01_18200 0.40 -2.0 750,006 - CSW01_18200 0.40 -3.0 750,039 - CSW01_18200 0.44 +0.7 750,039 - CSW01_18200 0.44 +0.8 750,079 - CSW01_18200 0.49 -0.0 750,350 + CSW01_18200 0.81 +0.8 750,418 - CSW01_18200 0.89 +0.4 750,503 - +2.5 750,563 - +0.0 750,574 + +0.2 750,574 + -0.0 750,598 + +0.1 750,630 + +0.5 750,630 + -2.4 750,652 + +0.3 750,736 + CSW01_18205 0.12 +0.8 751,096 + CSW01_18205 0.64 +0.4 751,098 + CSW01_18205 0.64 +0.7 751,141 + CSW01_18205 0.70 +0.2 751,203 + CSW01_18205 0.79 +1.9 751,246 + CSW01_18205 0.85 +1.2 751,260 - CSW01_18205 0.87 +2.6 751,267 + CSW01_18205 0.88 +0.9 751,421 - -2.2 751,530 + -2.6 751,565 + -1.5 751,573 - +0.6 751,573 - +1.4 751,681 - +1.3 751,698 - -0.4 751,757 + -2.1 751,791 + CSW01_18210 0.11 -2.2 751,804 + CSW01_18210 0.12 +0.3 751,834 + CSW01_18210 0.14 -0.1 751,884 - CSW01_18210 0.17 +1.5 751,916 + CSW01_18210 0.19 +0.1 751,992 - CSW01_18210 0.24 -0.2 751,997 - CSW01_18210 0.24 +1.7 751,999 + CSW01_18210 0.24 +1.1 752,007 - CSW01_18210 0.25 +0.0 752,195 + CSW01_18210 0.37 -0.6 752,271 + CSW01_18210 0.42 +0.5 752,271 + CSW01_18210 0.42 -0.9 752,271 + CSW01_18210 0.42 -1.8 752,271 + CSW01_18210 0.42 -0.4 752,279 - CSW01_18210 0.42 -0.5 752,279 - CSW01_18210 0.42 -0.2
Or see this region's nucleotide sequence