Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18160 and CSW01_18165 are separated by 321 nucleotides CSW01_18165 and CSW01_18170 are separated by 118 nucleotides CSW01_18170 and CSW01_18175 are separated by 85 nucleotides
CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171
_18160
CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975
_18165
CSW01_18170: CSW01_18170 - inosine/guanosine kinase, at 740,094 to 741,398
_18170
CSW01_18175: CSW01_18175 - LTA synthase family protein, at 741,484 to 743,457
_18175
Position (kb) 740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 739.152 kb on + strand at 739.195 kb on + strand at 739.239 kb on + strand at 739.261 kb on + strand at 739.396 kb on - strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.410 kb on - strand at 739.412 kb on + strand at 739.420 kb on - strand at 739.514 kb on + strand at 739.514 kb on + strand at 739.522 kb on - strand at 739.547 kb on + strand, within CSW01_18165 at 739.681 kb on - strand, within CSW01_18165 at 739.762 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.904 kb on - strand, within CSW01_18165 at 739.904 kb on - strand, within CSW01_18165 at 739.934 kb on + strand at 739.942 kb on - strand at 739.991 kb on + strand at 739.997 kb on - strand at 739.998 kb on - strand at 740.019 kb on - strand at 740.111 kb on + strand at 740.111 kb on + strand at 740.111 kb on + strand at 740.184 kb on - strand at 740.185 kb on - strand at 740.254 kb on + strand, within CSW01_18170 at 740.269 kb on - strand, within CSW01_18170 at 740.282 kb on - strand, within CSW01_18170 at 740.303 kb on + strand, within CSW01_18170 at 740.311 kb on - strand, within CSW01_18170 at 740.353 kb on + strand, within CSW01_18170 at 740.434 kb on + strand, within CSW01_18170 at 740.480 kb on + strand, within CSW01_18170 at 740.554 kb on - strand, within CSW01_18170 at 740.702 kb on + strand, within CSW01_18170 at 740.762 kb on + strand, within CSW01_18170 at 740.763 kb on + strand, within CSW01_18170 at 740.763 kb on + strand, within CSW01_18170 at 740.923 kb on + strand, within CSW01_18170 at 740.926 kb on - strand, within CSW01_18170 at 740.937 kb on - strand, within CSW01_18170 at 740.939 kb on + strand, within CSW01_18170 at 740.939 kb on + strand, within CSW01_18170 at 740.963 kb on + strand, within CSW01_18170 at 740.971 kb on - strand, within CSW01_18170 at 741.061 kb on + strand, within CSW01_18170 at 741.149 kb on + strand, within CSW01_18170 at 741.157 kb on - strand, within CSW01_18170 at 741.263 kb on - strand, within CSW01_18170 at 741.265 kb on + strand, within CSW01_18170 at 741.347 kb on + strand at 741.355 kb on - strand at 741.355 kb on - strand at 741.594 kb on + strand at 741.804 kb on - strand, within CSW01_18175 at 741.917 kb on - strand, within CSW01_18175 at 742.134 kb on - strand, within CSW01_18175 at 742.141 kb on - strand, within CSW01_18175 at 742.170 kb on - strand, within CSW01_18175 at 742.175 kb on - strand, within CSW01_18175 at 742.390 kb on + strand, within CSW01_18175 at 742.398 kb on - strand, within CSW01_18175
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 739,152 + -0.4 739,195 + -1.5 739,239 + +0.6 739,261 + -2.9 739,396 - -0.2 739,402 + +1.2 739,402 + -2.4 739,402 + +0.2 739,410 - +0.7 739,412 + +1.0 739,420 - +0.2 739,514 + -3.1 739,514 + -1.5 739,522 - -1.4 739,547 + CSW01_18165 0.11 -0.7 739,681 - CSW01_18165 0.39 +2.2 739,762 + CSW01_18165 0.56 +1.0 739,896 + CSW01_18165 0.83 -0.1 739,896 + CSW01_18165 0.83 +0.5 739,896 + CSW01_18165 0.83 -2.8 739,896 + CSW01_18165 0.83 -3.4 739,896 + CSW01_18165 0.83 +2.3 739,896 + CSW01_18165 0.83 +0.1 739,904 - CSW01_18165 0.85 -0.8 739,904 - CSW01_18165 0.85 +0.8 739,934 + -1.7 739,942 - -0.8 739,991 + +1.0 739,997 - -0.2 739,998 - -1.4 740,019 - +0.0 740,111 + +0.8 740,111 + +1.0 740,111 + -0.5 740,184 - -1.0 740,185 - -3.5 740,254 + CSW01_18170 0.12 +0.1 740,269 - CSW01_18170 0.13 -1.3 740,282 - CSW01_18170 0.14 +2.9 740,303 + CSW01_18170 0.16 -0.4 740,311 - CSW01_18170 0.17 +0.4 740,353 + CSW01_18170 0.20 -3.2 740,434 + CSW01_18170 0.26 +0.3 740,480 + CSW01_18170 0.30 +1.7 740,554 - CSW01_18170 0.35 -0.6 740,702 + CSW01_18170 0.47 +1.0 740,762 + CSW01_18170 0.51 +0.7 740,763 + CSW01_18170 0.51 -3.8 740,763 + CSW01_18170 0.51 +0.1 740,923 + CSW01_18170 0.64 -1.8 740,926 - CSW01_18170 0.64 +0.4 740,937 - CSW01_18170 0.65 -2.7 740,939 + CSW01_18170 0.65 +0.8 740,939 + CSW01_18170 0.65 -0.3 740,963 + CSW01_18170 0.67 +0.0 740,971 - CSW01_18170 0.67 -1.2 741,061 + CSW01_18170 0.74 -0.4 741,149 + CSW01_18170 0.81 -2.1 741,157 - CSW01_18170 0.81 -0.2 741,263 - CSW01_18170 0.90 +0.6 741,265 + CSW01_18170 0.90 -1.2 741,347 + +0.9 741,355 - +0.5 741,355 - -3.4 741,594 + -1.1 741,804 - CSW01_18175 0.16 +1.0 741,917 - CSW01_18175 0.22 +0.3 742,134 - CSW01_18175 0.33 +1.0 742,141 - CSW01_18175 0.33 +0.9 742,170 - CSW01_18175 0.35 +0.1 742,175 - CSW01_18175 0.35 -2.2 742,390 + CSW01_18175 0.46 -2.9 742,398 - CSW01_18175 0.46 -4.0
Or see this region's nucleotide sequence