Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17725 and CSW01_17730 are separated by 30 nucleotides CSW01_17730 and CSW01_17735 are separated by 54 nucleotides CSW01_17735 and CSW01_17740 are separated by 68 nucleotides
CSW01_17725: CSW01_17725 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 651,003 to 653,957
_17725
CSW01_17730: CSW01_17730 - TMAO reductase system periplasmic protein TorT, at 653,988 to 655,037
_17730
CSW01_17735: CSW01_17735 - methylglyoxal synthase, at 655,092 to 655,547
_17735
CSW01_17740: CSW01_17740 - nicotinamidase/pyrazinamidase, at 655,616 to 656,236
_17740
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.993 kb on - strand, within CSW01_17725 at 653.011 kb on - strand, within CSW01_17725 at 653.035 kb on + strand, within CSW01_17725 at 653.090 kb on + strand, within CSW01_17725 at 653.106 kb on - strand, within CSW01_17725 at 653.106 kb on - strand, within CSW01_17725 at 653.138 kb on + strand, within CSW01_17725 at 653.138 kb on + strand, within CSW01_17725 at 653.146 kb on - strand, within CSW01_17725 at 653.146 kb on - strand, within CSW01_17725 at 653.146 kb on - strand, within CSW01_17725 at 653.146 kb on - strand, within CSW01_17725 at 653.326 kb on - strand, within CSW01_17725 at 653.388 kb on - strand, within CSW01_17725 at 653.449 kb on - strand, within CSW01_17725 at 653.545 kb on + strand, within CSW01_17725 at 653.547 kb on + strand, within CSW01_17725 at 653.606 kb on - strand, within CSW01_17725 at 653.606 kb on - strand, within CSW01_17725 at 653.614 kb on + strand, within CSW01_17725 at 653.617 kb on - strand, within CSW01_17725 at 653.617 kb on - strand, within CSW01_17725 at 653.660 kb on + strand, within CSW01_17725 at 653.750 kb on + strand at 653.758 kb on - strand at 653.780 kb on + strand at 653.879 kb on - strand at 653.998 kb on + strand at 653.998 kb on + strand at 654.011 kb on - strand at 654.015 kb on + strand at 654.054 kb on - strand at 654.196 kb on - strand, within CSW01_17730 at 654.290 kb on - strand, within CSW01_17730 at 654.450 kb on - strand, within CSW01_17730 at 654.536 kb on - strand, within CSW01_17730 at 654.585 kb on - strand, within CSW01_17730 at 654.672 kb on + strand, within CSW01_17730 at 654.673 kb on + strand, within CSW01_17730 at 654.681 kb on - strand, within CSW01_17730 at 654.686 kb on - strand, within CSW01_17730 at 654.854 kb on + strand, within CSW01_17730 at 654.959 kb on - strand at 655.177 kb on + strand, within CSW01_17735 at 655.177 kb on + strand, within CSW01_17735 at 655.177 kb on + strand, within CSW01_17735 at 655.185 kb on - strand, within CSW01_17735 at 655.185 kb on - strand, within CSW01_17735 at 655.185 kb on - strand, within CSW01_17735 at 655.185 kb on - strand, within CSW01_17735 at 655.185 kb on - strand, within CSW01_17735 at 655.200 kb on - strand, within CSW01_17735 at 655.532 kb on - strand at 655.548 kb on + strand at 655.613 kb on + strand at 655.633 kb on + strand at 655.641 kb on - strand at 655.705 kb on + strand, within CSW01_17740 at 655.713 kb on - strand, within CSW01_17740 at 655.713 kb on - strand, within CSW01_17740 at 655.911 kb on - strand, within CSW01_17740 at 655.996 kb on + strand, within CSW01_17740 at 656.030 kb on - strand, within CSW01_17740
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 652,993 - CSW01_17725 0.67 -1.0 653,011 - CSW01_17725 0.68 -3.7 653,035 + CSW01_17725 0.69 +0.7 653,090 + CSW01_17725 0.71 -0.8 653,106 - CSW01_17725 0.71 +0.6 653,106 - CSW01_17725 0.71 -2.2 653,138 + CSW01_17725 0.72 -1.6 653,138 + CSW01_17725 0.72 -0.6 653,146 - CSW01_17725 0.73 -3.3 653,146 - CSW01_17725 0.73 -0.9 653,146 - CSW01_17725 0.73 +0.9 653,146 - CSW01_17725 0.73 +0.7 653,326 - CSW01_17725 0.79 -2.6 653,388 - CSW01_17725 0.81 -0.4 653,449 - CSW01_17725 0.83 +0.5 653,545 + CSW01_17725 0.86 +0.2 653,547 + CSW01_17725 0.86 -0.1 653,606 - CSW01_17725 0.88 +1.1 653,606 - CSW01_17725 0.88 -1.4 653,614 + CSW01_17725 0.88 -0.0 653,617 - CSW01_17725 0.88 +0.8 653,617 - CSW01_17725 0.88 +0.9 653,660 + CSW01_17725 0.90 +0.7 653,750 + -0.1 653,758 - -0.1 653,780 + -2.7 653,879 - +1.9 653,998 + -0.7 653,998 + +0.9 654,011 - -1.0 654,015 + -0.1 654,054 - +0.8 654,196 - CSW01_17730 0.20 -1.3 654,290 - CSW01_17730 0.29 -0.1 654,450 - CSW01_17730 0.44 -0.3 654,536 - CSW01_17730 0.52 +0.8 654,585 - CSW01_17730 0.57 +0.1 654,672 + CSW01_17730 0.65 -2.8 654,673 + CSW01_17730 0.65 +0.0 654,681 - CSW01_17730 0.66 -2.8 654,686 - CSW01_17730 0.66 -0.8 654,854 + CSW01_17730 0.82 -1.3 654,959 - -2.8 655,177 + CSW01_17735 0.19 -0.4 655,177 + CSW01_17735 0.19 -0.7 655,177 + CSW01_17735 0.19 +1.2 655,185 - CSW01_17735 0.20 +1.3 655,185 - CSW01_17735 0.20 -2.5 655,185 - CSW01_17735 0.20 -1.3 655,185 - CSW01_17735 0.20 +0.4 655,185 - CSW01_17735 0.20 -2.7 655,200 - CSW01_17735 0.24 -0.5 655,532 - +1.8 655,548 + +1.1 655,613 + -0.7 655,633 + +0.6 655,641 - +0.8 655,705 + CSW01_17740 0.14 +0.4 655,713 - CSW01_17740 0.16 -2.2 655,713 - CSW01_17740 0.16 -1.5 655,911 - CSW01_17740 0.48 -2.4 655,996 + CSW01_17740 0.61 -2.5 656,030 - CSW01_17740 0.67 +0.6
Or see this region's nucleotide sequence