Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16655 and CSW01_16660 are separated by 151 nucleotides CSW01_16660 and CSW01_16665 are separated by 140 nucleotides CSW01_16665 and CSW01_16670 are separated by 222 nucleotides CSW01_16670 and CSW01_16675 overlap by 4 nucleotides
CSW01_16655: CSW01_16655 - hypothetical protein, at 420,965 to 421,633
_16655
CSW01_16660: CSW01_16660 - hypothetical protein, at 421,785 to 422,072
_16660
CSW01_16665: CSW01_16665 - nucleotide pyrophosphohydrolase, at 422,213 to 422,584
_16665
CSW01_16670: CSW01_16670 - DUF1778 domain-containing protein, at 422,807 to 423,076
_16670
CSW01_16675: CSW01_16675 - N-acetyltransferase, at 423,073 to 423,606
_16675
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 421.532 kb on - strand, within CSW01_16655 at 421.538 kb on + strand, within CSW01_16655 at 421.656 kb on - strand at 421.775 kb on + strand at 421.783 kb on - strand at 421.783 kb on - strand at 421.898 kb on - strand, within CSW01_16660 at 421.935 kb on + strand, within CSW01_16660 at 421.968 kb on + strand, within CSW01_16660 at 421.994 kb on + strand, within CSW01_16660 at 421.994 kb on + strand, within CSW01_16660 at 421.997 kb on - strand, within CSW01_16660 at 422.025 kb on - strand, within CSW01_16660 at 422.131 kb on + strand at 422.131 kb on + strand at 422.160 kb on - strand at 422.167 kb on - strand at 422.183 kb on - strand at 422.185 kb on - strand at 422.241 kb on - strand at 422.333 kb on - strand, within CSW01_16665 at 422.370 kb on - strand, within CSW01_16665 at 422.390 kb on + strand, within CSW01_16665 at 422.411 kb on - strand, within CSW01_16665 at 422.580 kb on - strand at 422.597 kb on - strand at 422.599 kb on - strand at 422.599 kb on - strand at 423.092 kb on + strand at 423.178 kb on + strand, within CSW01_16675 at 423.196 kb on + strand, within CSW01_16675 at 423.196 kb on + strand, within CSW01_16675 at 423.214 kb on + strand, within CSW01_16675 at 423.222 kb on - strand, within CSW01_16675 at 423.283 kb on + strand, within CSW01_16675 at 423.370 kb on + strand, within CSW01_16675 at 423.400 kb on - strand, within CSW01_16675 at 423.400 kb on - strand, within CSW01_16675 at 423.412 kb on + strand, within CSW01_16675 at 423.425 kb on - strand, within CSW01_16675 at 423.456 kb on + strand, within CSW01_16675 at 423.542 kb on + strand, within CSW01_16675
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 421,532 - CSW01_16655 0.85 -3.2 421,538 + CSW01_16655 0.86 -0.5 421,656 - -0.1 421,775 + -0.1 421,783 - -0.3 421,783 - +0.8 421,898 - CSW01_16660 0.39 +0.3 421,935 + CSW01_16660 0.52 -0.4 421,968 + CSW01_16660 0.64 +0.1 421,994 + CSW01_16660 0.73 -2.5 421,994 + CSW01_16660 0.73 -2.0 421,997 - CSW01_16660 0.74 -0.3 422,025 - CSW01_16660 0.83 -0.9 422,131 + +0.3 422,131 + -0.9 422,160 - +0.8 422,167 - -0.1 422,183 - +1.8 422,185 - -0.3 422,241 - +1.6 422,333 - CSW01_16665 0.32 +0.6 422,370 - CSW01_16665 0.42 -1.7 422,390 + CSW01_16665 0.48 -0.8 422,411 - CSW01_16665 0.53 -0.5 422,580 - +1.9 422,597 - +0.2 422,599 - +0.7 422,599 - +0.0 423,092 + +0.4 423,178 + CSW01_16675 0.20 -0.5 423,196 + CSW01_16675 0.23 -1.9 423,196 + CSW01_16675 0.23 -1.2 423,214 + CSW01_16675 0.26 +0.5 423,222 - CSW01_16675 0.28 -1.5 423,283 + CSW01_16675 0.39 +0.2 423,370 + CSW01_16675 0.56 +1.0 423,400 - CSW01_16675 0.61 -0.1 423,400 - CSW01_16675 0.61 +0.8 423,412 + CSW01_16675 0.63 +1.7 423,425 - CSW01_16675 0.66 +4.4 423,456 + CSW01_16675 0.72 +1.3 423,542 + CSW01_16675 0.88 +1.2
Or see this region's nucleotide sequence