Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16640 and CSW01_16645 overlap by 4 nucleotides CSW01_16645 and CSW01_16650 are separated by 69 nucleotides CSW01_16650 and CSW01_16655 are separated by 56 nucleotides CSW01_16655 and CSW01_16660 are separated by 151 nucleotides CSW01_16660 and CSW01_16665 are separated by 140 nucleotides
CSW01_16640: CSW01_16640 - N-acetyltransferase, at 419,968 to 420,465
_16640
CSW01_16645: CSW01_16645 - DUF1778 domain-containing protein, at 420,462 to 420,734
_16645
CSW01_16650: CSW01_16650 - hypothetical protein, at 420,804 to 420,908
_16650
CSW01_16655: CSW01_16655 - hypothetical protein, at 420,965 to 421,633
_16655
CSW01_16660: CSW01_16660 - hypothetical protein, at 421,785 to 422,072
_16660
CSW01_16665: CSW01_16665 - nucleotide pyrophosphohydrolase, at 422,213 to 422,584
_16665
Position (kb) 420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 420.933 kb on + strand at 421.039 kb on + strand, within CSW01_16655 at 421.092 kb on + strand, within CSW01_16655 at 421.125 kb on + strand, within CSW01_16655 at 421.172 kb on + strand, within CSW01_16655 at 421.532 kb on - strand, within CSW01_16655 at 421.538 kb on + strand, within CSW01_16655 at 421.656 kb on - strand at 421.775 kb on + strand at 421.783 kb on - strand at 421.783 kb on - strand at 421.898 kb on - strand, within CSW01_16660 at 421.935 kb on + strand, within CSW01_16660 at 421.968 kb on + strand, within CSW01_16660 at 421.994 kb on + strand, within CSW01_16660 at 421.994 kb on + strand, within CSW01_16660 at 421.997 kb on - strand, within CSW01_16660 at 422.025 kb on - strand, within CSW01_16660 at 422.131 kb on + strand at 422.131 kb on + strand at 422.160 kb on - strand at 422.167 kb on - strand at 422.183 kb on - strand at 422.185 kb on - strand at 422.241 kb on - strand at 422.333 kb on - strand, within CSW01_16665 at 422.370 kb on - strand, within CSW01_16665 at 422.390 kb on + strand, within CSW01_16665 at 422.411 kb on - strand, within CSW01_16665 at 422.580 kb on - strand at 422.597 kb on - strand at 422.599 kb on - strand at 422.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 420,933 + +0.6 421,039 + CSW01_16655 0.11 +0.9 421,092 + CSW01_16655 0.19 -1.4 421,125 + CSW01_16655 0.24 -1.8 421,172 + CSW01_16655 0.31 -2.9 421,532 - CSW01_16655 0.85 -3.2 421,538 + CSW01_16655 0.86 -0.5 421,656 - -0.1 421,775 + -0.1 421,783 - -0.3 421,783 - +0.8 421,898 - CSW01_16660 0.39 +0.3 421,935 + CSW01_16660 0.52 -0.4 421,968 + CSW01_16660 0.64 +0.1 421,994 + CSW01_16660 0.73 -2.5 421,994 + CSW01_16660 0.73 -2.0 421,997 - CSW01_16660 0.74 -0.3 422,025 - CSW01_16660 0.83 -0.9 422,131 + +0.3 422,131 + -0.9 422,160 - +0.8 422,167 - -0.1 422,183 - +1.8 422,185 - -0.3 422,241 - +1.6 422,333 - CSW01_16665 0.32 +0.6 422,370 - CSW01_16665 0.42 -1.7 422,390 + CSW01_16665 0.48 -0.8 422,411 - CSW01_16665 0.53 -0.5 422,580 - +1.9 422,597 - +0.2 422,599 - +0.7 422,599 - +0.0
Or see this region's nucleotide sequence