Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16410 and CSW01_16415 are separated by 271 nucleotides CSW01_16415 and CSW01_16420 are separated by 177 nucleotides CSW01_16420 and CSW01_16425 are separated by 150 nucleotides CSW01_16425 and CSW01_16430 are separated by 137 nucleotides
CSW01_16410: CSW01_16410 - site-specific DNA-methyltransferase, at 398,537 to 399,229
_16410
CSW01_16415: CSW01_16415 - hypothetical protein, at 399,501 to 399,926
_16415
CSW01_16420: CSW01_16420 - DUF3465 domain-containing protein, at 400,104 to 400,529
_16420
CSW01_16425: CSW01_16425 - hypothetical protein, at 400,680 to 401,210
_16425
CSW01_16430: CSW01_16430 - hypothetical protein, at 401,348 to 401,848
_16430
Position (kb) 400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 399.179 kb on + strand at 399.203 kb on - strand at 399.241 kb on - strand at 399.290 kb on + strand at 399.330 kb on + strand at 399.330 kb on + strand at 399.338 kb on - strand at 399.355 kb on - strand at 399.355 kb on - strand at 400.137 kb on - strand at 400.161 kb on + strand, within CSW01_16420 at 400.179 kb on - strand, within CSW01_16420 at 400.247 kb on + strand, within CSW01_16420 at 400.283 kb on - strand, within CSW01_16420 at 400.653 kb on + strand at 400.660 kb on + strand at 400.725 kb on + strand at 400.726 kb on - strand at 400.797 kb on + strand, within CSW01_16425 at 400.854 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.975 kb on + strand, within CSW01_16425 at 400.988 kb on - strand, within CSW01_16425 at 401.085 kb on - strand, within CSW01_16425 at 401.103 kb on + strand, within CSW01_16425 at 401.111 kb on - strand, within CSW01_16425 at 401.111 kb on - strand, within CSW01_16425 at 401.150 kb on + strand, within CSW01_16425 at 401.163 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.277 kb on - strand at 401.277 kb on - strand at 401.312 kb on + strand at 401.314 kb on + strand at 401.315 kb on + strand at 401.323 kb on - strand at 401.325 kb on + strand at 401.325 kb on + strand at 401.339 kb on - strand at 401.406 kb on + strand, within CSW01_16430 at 401.433 kb on + strand, within CSW01_16430 at 401.496 kb on + strand, within CSW01_16430 at 401.507 kb on + strand, within CSW01_16430
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 399,179 + +1.6 399,203 - +0.7 399,241 - +0.1 399,290 + +0.6 399,330 + -0.1 399,330 + -0.1 399,338 - -1.6 399,355 - +0.5 399,355 - -1.5 400,137 - +1.5 400,161 + CSW01_16420 0.13 +0.7 400,179 - CSW01_16420 0.18 +1.1 400,247 + CSW01_16420 0.34 -0.2 400,283 - CSW01_16420 0.42 +0.1 400,653 + -0.2 400,660 + +1.1 400,725 + +0.7 400,726 - -2.7 400,797 + CSW01_16425 0.22 +1.0 400,854 + CSW01_16425 0.33 -0.8 400,863 + CSW01_16425 0.34 -2.4 400,863 + CSW01_16425 0.34 -0.7 400,871 - CSW01_16425 0.36 -0.7 400,871 - CSW01_16425 0.36 +0.8 400,871 - CSW01_16425 0.36 -0.4 400,975 + CSW01_16425 0.56 +1.2 400,988 - CSW01_16425 0.58 -0.5 401,085 - CSW01_16425 0.76 -2.5 401,103 + CSW01_16425 0.80 -0.6 401,111 - CSW01_16425 0.81 -0.0 401,111 - CSW01_16425 0.81 +0.5 401,150 + CSW01_16425 0.89 +0.9 401,163 + -1.3 401,225 - +0.6 401,225 - +1.0 401,225 - +0.3 401,277 - -1.0 401,277 - -0.0 401,312 + +0.0 401,314 + +0.2 401,315 + +0.3 401,323 - -3.0 401,325 + +0.4 401,325 + -2.7 401,339 - +0.5 401,406 + CSW01_16430 0.12 +1.1 401,433 + CSW01_16430 0.17 -1.8 401,496 + CSW01_16430 0.30 -3.1 401,507 + CSW01_16430 0.32 +0.3
Or see this region's nucleotide sequence