Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15845 and CSW01_15850 are separated by 59 nucleotides CSW01_15850 and CSW01_15855 are separated by 149 nucleotides CSW01_15855 and CSW01_15860 are separated by 27 nucleotides CSW01_15860 and CSW01_15865 are separated by 183 nucleotides CSW01_15865 and CSW01_15870 are separated by 127 nucleotides CSW01_15870 and CSW01_15875 overlap by 4 nucleotides CSW01_15875 and CSW01_15880 are separated by 228 nucleotides
CSW01_15845: CSW01_15845 - DUF3265 domain-containing protein, at 346,199 to 346,315
_15845
CSW01_15850: CSW01_15850 - hypothetical protein, at 346,375 to 346,536
_15850
CSW01_15855: CSW01_15855 - acetyltransferase, at 346,686 to 346,865
_15855
CSW01_15860: CSW01_15860 - DUF645 domain-containing protein, at 346,893 to 347,072
_15860
CSW01_15865: CSW01_15865 - DUF3465 domain-containing protein, at 347,256 to 347,681
_15865
CSW01_15870: CSW01_15870 - type II toxin-antitoxin system RelE/ParE family toxin, at 347,809 to 348,108
_15870
CSW01_15875: CSW01_15875 - type II toxin-antitoxin system ParD family antitoxin, at 348,105 to 348,347
_15875
CSW01_15880: CSW01_15880 - hypothetical protein, at 348,576 to 349,154
_15880
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 346.261 kb on - strand, within CSW01_15845 at 346.281 kb on - strand, within CSW01_15845 at 346.306 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.316 kb on - strand at 346.936 kb on + strand, within CSW01_15860 at 346.949 kb on + strand, within CSW01_15860 at 346.993 kb on + strand, within CSW01_15860 at 347.030 kb on + strand, within CSW01_15860 at 347.389 kb on + strand, within CSW01_15865 at 347.547 kb on - strand, within CSW01_15865 at 347.750 kb on + strand at 347.750 kb on + strand at 347.750 kb on + strand at 347.750 kb on + strand at 347.779 kb on - strand at 347.779 kb on - strand at 347.842 kb on + strand, within CSW01_15870 at 348.479 kb on + strand at 348.587 kb on + strand at 348.666 kb on - strand, within CSW01_15880 at 348.673 kb on + strand, within CSW01_15880 at 348.676 kb on - strand, within CSW01_15880
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 346,261 - CSW01_15845 0.53 -0.5 346,281 - CSW01_15845 0.70 -1.4 346,306 - -0.2 346,316 - -1.0 346,316 - -2.6 346,316 - -1.1 346,316 - +0.3 346,316 - -0.2 346,316 - -2.5 346,316 - +0.7 346,316 - -0.9 346,936 + CSW01_15860 0.24 +1.5 346,949 + CSW01_15860 0.31 -0.1 346,993 + CSW01_15860 0.56 +1.3 347,030 + CSW01_15860 0.76 +0.5 347,389 + CSW01_15865 0.31 -0.1 347,547 - CSW01_15865 0.68 -2.4 347,750 + -2.1 347,750 + -0.2 347,750 + +0.4 347,750 + +0.5 347,779 - -2.6 347,779 - +1.0 347,842 + CSW01_15870 0.11 -0.1 348,479 + +0.9 348,587 + +1.0 348,666 - CSW01_15880 0.16 +0.2 348,673 + CSW01_15880 0.17 -1.6 348,676 - CSW01_15880 0.17 +1.0
Or see this region's nucleotide sequence