Experiment: ICP3_phage_4.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15405 and CSW01_15410 are separated by 248 nucleotides CSW01_15410 and CSW01_15415 overlap by 61 nucleotides CSW01_15415 and CSW01_15420 overlap by 20 nucleotides CSW01_15420 and CSW01_15425 overlap by 14 nucleotides CSW01_15425 and CSW01_15430 are separated by 111 nucleotides
CSW01_15405: CSW01_15405 - integron integrase, at 309,306 to 310,268
_15405
CSW01_15410: CSW01_15410 - hypothetical protein, at 310,517 to 310,808
_15410
CSW01_15415: CSW01_15415 - DUF3265 domain-containing protein, at 310,748 to 310,915
_15415
CSW01_15420: CSW01_15420 - glyoxalase, at 310,896 to 311,270
_15420
CSW01_15425: CSW01_15425 - DUF3265 domain-containing protein, at 311,257 to 311,403
_15425
CSW01_15430: CSW01_15430 - hypothetical protein, at 311,515 to 311,703
_15430
Position (kb) 310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.538 kb on - strand, within CSW01_15405 at 309.623 kb on + strand, within CSW01_15405 at 309.864 kb on + strand, within CSW01_15405 at 309.951 kb on - strand, within CSW01_15405 at 310.058 kb on - strand, within CSW01_15405 at 310.058 kb on - strand, within CSW01_15405 at 310.058 kb on - strand, within CSW01_15405 at 310.346 kb on - strand at 310.476 kb on + strand at 310.479 kb on - strand at 310.491 kb on + strand at 310.499 kb on - strand at 310.555 kb on + strand, within CSW01_15410 at 310.555 kb on + strand, within CSW01_15410 at 310.608 kb on - strand, within CSW01_15410 at 310.632 kb on - strand, within CSW01_15410 at 310.639 kb on - strand, within CSW01_15410 at 310.746 kb on - strand, within CSW01_15410 at 310.750 kb on + strand at 310.758 kb on - strand at 310.773 kb on + strand at 310.908 kb on + strand at 310.908 kb on + strand at 310.908 kb on + strand at 310.908 kb on + strand at 310.916 kb on - strand at 310.916 kb on - strand at 310.998 kb on - strand, within CSW01_15420 at 310.998 kb on - strand, within CSW01_15420 at 311.098 kb on - strand, within CSW01_15420 at 311.118 kb on + strand, within CSW01_15420 at 311.246 kb on + strand at 311.246 kb on + strand at 311.355 kb on + strand, within CSW01_15425 at 311.381 kb on + strand, within CSW01_15425 at 311.396 kb on + strand at 311.396 kb on + strand at 311.396 kb on + strand at 311.404 kb on - strand at 311.406 kb on + strand at 311.456 kb on - strand at 311.461 kb on - strand at 311.551 kb on - strand, within CSW01_15430 at 311.557 kb on + strand, within CSW01_15430 at 311.596 kb on - strand, within CSW01_15430 at 311.689 kb on - strand at 311.689 kb on - strand at 311.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep2 remove 309,538 - CSW01_15405 0.24 -0.6 309,623 + CSW01_15405 0.33 +0.3 309,864 + CSW01_15405 0.58 -1.5 309,951 - CSW01_15405 0.67 +0.3 310,058 - CSW01_15405 0.78 -0.0 310,058 - CSW01_15405 0.78 -1.5 310,058 - CSW01_15405 0.78 -0.8 310,346 - -0.3 310,476 + +2.3 310,479 - -1.1 310,491 + +0.1 310,499 - -1.5 310,555 + CSW01_15410 0.13 -1.3 310,555 + CSW01_15410 0.13 -0.6 310,608 - CSW01_15410 0.31 -0.3 310,632 - CSW01_15410 0.39 +1.1 310,639 - CSW01_15410 0.42 -0.3 310,746 - CSW01_15410 0.78 -0.9 310,750 + +1.1 310,758 - +0.1 310,773 + -0.3 310,908 + -1.7 310,908 + +0.7 310,908 + +0.6 310,908 + -0.6 310,916 - +0.0 310,916 - -2.0 310,998 - CSW01_15420 0.27 -0.4 310,998 - CSW01_15420 0.27 +1.6 311,098 - CSW01_15420 0.54 +0.4 311,118 + CSW01_15420 0.59 +0.2 311,246 + +0.6 311,246 + -1.3 311,355 + CSW01_15425 0.67 -3.3 311,381 + CSW01_15425 0.84 +0.8 311,396 + +0.0 311,396 + -0.6 311,396 + -0.3 311,404 - -3.0 311,406 + +0.8 311,456 - +0.5 311,461 - +1.7 311,551 - CSW01_15430 0.19 +0.8 311,557 + CSW01_15430 0.22 +2.8 311,596 - CSW01_15430 0.43 +0.8 311,689 - -1.7 311,689 - -0.8 311,793 - +0.9
Or see this region's nucleotide sequence